cluster # 928

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 928 cluster # 928 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_928#0 length = 615 sequences # 1

consensus_928#1 length = 248 sequences # 1

consensusID : consensus_928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [GATCCCCCGAGGTTAACGGCGCAGCACACAAGCTAGAGATTCGCATGCGTTACCTGTTGCAGATATTCACCGAGGCAAACTGTTACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCGACGTGGCCTCCGTCGGGCGCATTACGAACGCGGCGATACGATCGAAATCCCTCGTAGTGTGTCGACAGTTGCGCAACGGGCTGAAGGATATGACTCGCTGGAGCTTCAACGAGTGTCTTGCGTACCGTCCGTTTATGATCGCCTTGCAGCCTCAGCTAGCGGTGCTGGATAAGTTTGTCATTCAGCAGGAATCCATTCCGTCGCTGATGCACACGAACCGCCGTGACGGGGGTTTCAGCCTTTTCGCCGCTCGTGATGGGTAGCATGCACACTTTCCGCGATAGTGAGGCGCCCGCTGCAGGCGTTGCTGTGGGCGGAAGCAAGGGGCTTAACCAAAGCCAAGGCGAGTCGCGGAATGTAGGCAACTCCAGTGTCAATAGCACCATGCAGCGCATGAGCTCGGCTGGTACAGTTGGGGCGGAAGCGTTGCGCTTTCAAGTGAAAGTGGTGGCGNTTGCGTGGTGGTGGCACTATCACCGGAACAATCGGCATCGT]

[+] EMBL AL695364             [GATCCCCCGAGGTTAACGGCGCAGCACACAAGCTAGAGATTCGCATGCGTTACCTGTTGCAGATATTCACCGAGGCAAACTGTTACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCGACGTGGCCTCCGTCGGGCGCATTACGAACGCGGCGATACGATCGAAATCCCTCGTAGTGTGTCGACAGTTGCGCAACGGGCTGAAGGATATGACTCGCTGGAGCTTCAACGAGTGTCTTGCGTACCGTCCGTTTATGATCGCCTTGCAGCCTCAGCTAGCGGTGCTGGATAAGTTTGTCATTCAGCAGGAATCCATTCCGTCGCTGATGCACACGAACCGCCGTGACGGGGGTTTCAGCCTTTTCGCCGCTCGTGATGGGTAGCATGCACACTTTCCGCGATAGTGAGGCGCCCGCTGCAGGCGTTGCTGTGGGCGGAAGCAAGGGGCTTAACCAAAGCCAAGGCGAGTCGCGGAATGTAGGCAACTCCAGTGTCAATAGCACCATGCAGCGCATGAGCTCGGCTGGTACAGTTGGGGCGGAAGCGTTGCGCTTTCAAGTGAAAGTGGTGGCGNTTGCGTGGTGGTGGCACTATCACCGGAACAATCGGCATCGT]




>consensus_928#0
GATCCCCCGAGGTTAACGGCGCAGCACACAAGCTAGAGATTCGCATGCGTTACCTGTTGC
AGATATTCACCGAGGCAAACTGTTACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCG
ACGTGGCCTCCGTCGGGCGCATTACGAACGCGGCGATACGATCGAAATCCCTCGTAGTGT
GTCGACAGTTGCGCAACGGGCTGAAGGATATGACTCGCTGGAGCTTCAACGAGTGTCTTG
CGTACCGTCCGTTTATGATCGCCTTGCAGCCTCAGCTAGCGGTGCTGGATAAGTTTGTCA
TTCAGCAGGAATCCATTCCGTCGCTGATGCACACGAACCGCCGTGACGGGGGTTTCAGCC
TTTTCGCCGCTCGTGATGGGTAGCATGCACACTTTCCGCGATAGTGAGGCGCCCGCTGCA
GGCGTTGCTGTGGGCGGAAGCAAGGGGCTTAACCAAAGCCAAGGCGAGTCGCGGAATGTA
GGCAACTCCAGTGTCAATAGCACCATGCAGCGCATGAGCTCGGCTGGTACAGTTGGGGCG
GAAGCGTTGCGCTTTCAAGTGAAAGTGGTGGCGNTTGCGTGGTGGTGGCACTATCACCGG
AACAATCGGCATCGT

consensusID : consensus_928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [AAGTGTCGACGATGTGCCGCGGTGCAGGTGGCCTGCAGAACATAACGCTTGGCGAGCAAAGCTTCAGCCAAGCGATGGAGAAAAACATTTCGAAGCAAAGCAAATCGAACCGGCGCAAGCAACACAAGCTAGAGATTCGCATGCGTTACCTGTTGCAGATATTCACCGAGGCAAACTGTTACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCGACGTGGCCTCCGTCGGGCGCATTACGAACGCG]

[+] EMBL AGA282024            [AAGTGTCGACGATGTGCCGCGGTGCAGGTGGCCTGCAGAACATAACGCTTGGCGAGCAAAGCTTCAGCCAAGCGATGGAGAAAAACATTTCGAAGCAAAGCAAATCGAACCGGCGCAAGCAACACAAGCTAGAGATTCGCATGCGTTACCTGTTGCAGATATTCACCGAGGCAAACTGTTACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCGACGTGGCCTCCGTCGGGCGCATTACGAACGCG]




>consensus_928#1
AAGTGTCGACGATGTGCCGCGGTGCAGGTGGCCTGCAGAACATAACGCTTGGCGAGCAAA
GCTTCAGCCAAGCGATGGAGAAAAACATTTCGAAGCAAAGCAAATCGAACCGGCGCAAGC
AACACAAGCTAGAGATTCGCATGCGTTACCTGTTGCAGATATTCACCGAGGCAAACTGTT
ACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCGACGTGGCCTCCGTCGGGCGCATTA
CGAACGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_928#0      ------------------------------------------------------------
consensus_928#1      AAGTGTCGACGATGTGCCGCGGTGCAGGTGGCCTGCAGAACATAACGCTTGGCGAGCAAA 60
                                                                                 

consensus_928#0      --------------------------------GATCCCCCGAGGTTAA--CGGCGCAGC- 25
consensus_928#1      GCTTCAGCCAAGCGATGGAGAAAAACATTTCGAAGCAAAGCAAATCGAACCGGCGCAAGC 120
                                                      * *     *  *  *  *******   

consensus_928#0      -ACACAAGCTAGAGATTCGCATGCGTTACCTGTTGCAGATATTCACCGAGGCAAACTGTT 84
consensus_928#1      AACACAAGCTAGAGATTCGCATGCGTTACCTGTTGCAGATATTCACCGAGGCAAACTGTT 180
                      ***********************************************************

consensus_928#0      ACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCGACGTGGCCTCCGTCGGGCGCATTA 144
consensus_928#1      ACGAGTTTGCGCTCCTGCTCTCCGTGCTGCTACTCGACGTGGCCTCCGTCGGGCGCATTA 240
                     ************************************************************

consensus_928#0      CGAACGCGGCGATACGATCGAAATCCCTCGTAGTGTGTCGACAGTTGCGCAACGGGCTGA 204
consensus_928#1      CGAACGCG---------------------------------------------------- 248
                     ********                                                    

consensus_928#0      AGGATATGACTCGCTGGAGCTTCAACGAGTGTCTTGCGTACCGTCCGTTTATGATCGCCT 264
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      TGCAGCCTCAGCTAGCGGTGCTGGATAAGTTTGTCATTCAGCAGGAATCCATTCCGTCGC 324
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      TGATGCACACGAACCGCCGTGACGGGGGTTTCAGCCTTTTCGCCGCTCGTGATGGGTAGC 384
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      ATGCACACTTTCCGCGATAGTGAGGCGCCCGCTGCAGGCGTTGCTGTGGGCGGAAGCAAG 444
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      GGGCTTAACCAAAGCCAAGGCGAGTCGCGGAATGTAGGCAACTCCAGTGTCAATAGCACC 504
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      ATGCAGCGCATGAGCTCGGCTGGTACAGTTGGGGCGGAAGCGTTGCGCTTTCAAGTGAAA 564
consensus_928#1      ------------------------------------------------------------
                                                                                 

consensus_928#0      GTGGTGGCGNTTGCGTGGTGGTGGCACTATCACCGGAACAATCGGCATCGT 615
consensus_928#1      ---------------------------------------------------