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Anopheles gambiae
cluster # 9306 cluster # 9306       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9306#0 length = 1510 sequences # 14  
consensus_9306#1 length = 660 sequences # 1  

consensusID : consensus_9306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1510
fasta sequence
                              [AAATGCAATGCGTTACCCAGCGTTACTAGACGGATTCAGCTCCTGCACCTTTATCTCCAACGTAAATACGCGGTTTAAATGACAAGGTTCGAAGGAAG-GGACGCCTAAACAAAATTGAGCAATAGTATGTTAACCAGAAGTGATGCGATCCGAGTGGA--CCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACG-AGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT-CCGAGCTGCGC-AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGGAATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTAC-GGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTA-CCAGCCAACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCATAGGAAGTCTGCTATCGAACCAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGATCATCTAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGAATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGTAAGACTGCCACGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTC-TAG-GCCCGTGGCGCATTTAATAGTTAATTTTGTTTGTGTTTTCGTATTCGTTTCAATCAGACTGACAGACAGTGCCATGCAGAGTGAAAAATGTCTGTTTGAATGCCGTTATTTCCTATGAATTGCAACAAGATTTCAATAAAGACTAGTTGAGACGGGTGT]

[+] EMBL CNS08SCA             [AAATGCAATGCGTTACCCAGCGTTACTAGACGGATTCAGCTCCTGCACCTTTATCTCCAACGTAAATACGCGGTTTAAATGACAAGGTTCGAAGGAAG GGACGCCTAAACAAAATTGAGCAATAGTATGTTAACCAGAAGTGATGCGATCCGAGTGGA  CCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGATTTTTTGTCCATGTTTCGCGGATACG AGTATTACAATCCCGACGACGGTGTGTATGACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAA CTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT CCGAGCTGCGC AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTATCAGCACGCAGGAATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTACGGGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTA GCAagc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CNS08Q3I             [ AATGCAATGCGTTACCCAGCGTTACTAGACGGATTCAGCTCCTGCACCTTTATCTCCAACGTAAATACGCGGTTTAAATGACAAGGTTCGAAGGAAG GGACGCCTAAACAAAATTGAGCAATAGTATGTTAACCAGAAGTGATGCGATCCGAGTGGA  CCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACG AGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CNS08O2Q             [                                                                         TTTAAATGACAAGGTTCGAAGGAAG GGACGCCTAAACAAAATTGAGCAATAGTATGTTAACCAGAAGTGATGCGATCCGAGTGGA  CCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACGTAGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT CCGAGCTGCGC AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGGAATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTAC GGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTA CCAGCCAACAGTCGGAGGCACGATCGATCGTTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM576536             [                                                                                   ccGGTTCGAAGGAAG GGACGCCTAAACAAAATTGAGCAATAATATGTTAACCAGAAGTGACGCGATCCGAGTGGA  CCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATCGCCAACACATTGCCGCAATCTCATAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCAACACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGGTACG AGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT CCGAGCTGCGC AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM577134             [                                                                                          ccgGGAAG GGACGCCTAAACAAAATTGAGCAATAATATGTTAACCAGAAGTGATGCGATCCGAGTGGA  CCGGGACTATCGGTACACTGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGTCGGTGCTATACACCATTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAATCTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACG AGTATTACAATCCCTATTATGGTGTGTATTACAACACGCCGCGCCTTATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCGGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT CCGAGCTGCGC AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACGGCTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS09GU5             [                                                                                             GGAAGTGGACGCCTAAACAAAATTGAGCAATAGTATGTTAACCAGAAGTGATGCGATCCGAGTGGATTTTGTTTCTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACG AGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT CCGAGCTGCGC AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGGAATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTAC GGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTA CCAGCCAACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCATAGGAAGTCTGCTATCGAACCAGAGCGTTCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CNS08RDK             [                                                                                                                                             TGATGCGATCCGAGTGGA  CCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACG AGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT CCGAGCTGCGCAAAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGGAATCGGCCGAGCCGAGCACAAAAAAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTACGGGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTA GCAGCCAACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CNS08XI6             [                                                                                                                                                                                                                                                                                                                                                                                           ACGAATATTTGTCCATGTTTCGCGGATACG AGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACT CCGAGCTGCGCAAAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGGAATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTAC GGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTA CCAGCCAACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CNS08O2R             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAAATGTACTCCCGA CTGCGC AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATAACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGGAATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTAC GGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTAGCCAGCCAACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCATAGGAAGTCTGCTATCGAACCAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGATCATCTAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGAATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGTAAGACTGCCACGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTC TAGCGCCCGTGGCGCATTTAATAGTTAATTTTGTTTGTGTTTTCGTATTCGTTTCAATCAGACTGACAGACAGTGCCATGCAGAGT                                                                             ]
[-] EMBL CNS08SCB             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACTCCCGAG TGCGC AAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCAATCAACCAAACGTTCATGGACACCTACTGCATAACTGTCGAGCGTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTATCAGCACGCAGGAATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTAC GGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTAGCCAGCCCACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCATAGGAAGTCTGCTATCGAACCAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGAAAAAATAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGAATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGTAAGACTGCCACGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTC TAG GCCCGTGGCGCATTTAATAGTTAATTTTGTTTGTGTTTTCGTATTCGTTTCAACCAGACTGACAGACAGTGCCATGCAGAGTGAAAAATGTCTGTTTGAATGCCGTTATTTCCTATGAATTGCAACAAGATTTCAATAAAGACTAGTTG          ]
[-] EMBL CNS09GU6             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGTAC GGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTAGCCAGCCAACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCATAGGAAGTCTGCTATCGAACCAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGATCATCTAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGAATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGTAAGACTGCCCCGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTC TAG GCCCGTGGCGCATTTAATAGTTAATTTTGTTTGTGTTTTCGTATTCGTTAAAAAAAAAAAAACAGACAGTGCCATGCAGAGTGAAAAATGTCTGTTTGAATGCCGTTATTTCCTATGAATTGCAACAAGATTTCAATAAAGAC                ]
[-] EMBL CNS08XI7             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCTAGCCAGCCTACAGTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCATAGGAAGTCTGCTATCGAACCAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGATCATCTAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGAATCCGTCACCCGCGGAAGTGCAAACTACTCGAGATGTCAACGTAAGACTGCCACGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTCATAC GCCCGTGGCGCATTTAATA                                                                                                                                            ]
[-] EMBL CNS08RDL             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 caAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGATCATCTAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGAATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGTAAGACTGCCACGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTC TAC GCCCGTGGCGCATTTAATAGTTAATTTTGTTTGTGTTTTCGTATTCGTTTCAATCAGACTGACAGACAGTGCCATGCAGAGTGAAAAATGTCTGTTTGAATGCCGTTATTTCCTATGAATTGCAAAAAAAATT                          ]
[-] EMBL CNS08Q3J             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGATCATCTAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGAATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGTAAGACTGCCACGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTC TAGCGCCCGTGGCGCATTTAATAGTTAATTTTGTTTGTGTTTTCGTATTCGTTTCAATCAGACTGACAGACAGTGCCATGCAGAGTGAAAAATGTCTGTTTGAATGCCGTTATTTCCTATGAATTGCAACAAGATTTCAATAAAGACTAGTTGAGACGGGTGT]


>consensus_9306#0 AAATGCAATGCGTTACCCAGCGTTACTAGACGGATTCAGCTCCTGCACCTTTATCTCCAA CGTAAATACGCGGTTTAAATGACAAGGTTCGAAGGAAGGGACGCCTAAACAAAATTGAGC AATAGTATGTTAACCAGAAGTGATGCGATCCGAGTGGACCGGGACTATCGGTACACCGGC GAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTT TATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAAT TTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAGA TGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACGAGTATTACAATCCC TACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCAT CCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTG TTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCCGGAAGCACGCCTCAATGGTGGAA ATGTACTCCGAGCTGCGCAAAAAGTATCGCGAGATTCGCAGCACCTACACCGATACCTCA ATCAACCAAACGTTCATGGACACCTACTGCATCACTGTCGAGCGTACGCCGTCCGTCTAC CAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAGGTGGCGGTACAGCTCTG TTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGGAATCGGCCGAGCCGAGC ACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTAGCTCGCAATCGTACGGG GATGATGAGCGGGAGAACCGACTGGCCGCGCTACCAGCCAACAGTCGGAGGCACGATCGA TCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAACATTAGCTCGCAGGACG TTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCATAGGAAGTCTGCTATCGA ACCAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGATCATCTAGTTACCCGGCGGC GTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCAGCTACAAAAGCAACCAC CGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATCCACCGCTACTCCCATGA ATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGTAAGACTGCCACGACTGC CCGGAGGATAATGAAGCGGTCGGCTCTCTAGGCCCGTGGCGCATTTAATAGTTAATTTTG TTTGTGTTTTCGTATTCGTTTCAATCAGACTGACAGACAGTGCCATGCAGAGTGAAAAAT GTCTGTTTGAATGCCGTTATTTCCTATGAATTGCAACAAGATTTCAATAAAGACTAGTTG AGACGGGTGT



consensusID : consensus_9306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence
                              [ATCCGNCACGATGAATGACAAGGTTCGAAGGAAGGGACGCCTAAACAAAATTGAGCAATAATATGTTAACCAGAAGTGATGCGATCCGAGTGGACCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAATCTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACTACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACGAGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTTCCGGGAAGCACGCCTCAATGGTGGAACATGTACTCCGAAGACTGCGCAAAAAAGTATCTCGGAGATTCGGCAGCACCTACAGCCGATACCTCAATCAAGCAAAACTGTTCATTGGGACNACCTNNCTGCGATCACTGTTGACGGTACG]

[+] EMBL BX466098             [ATCCGNCACGATGAATGACAAGGTTCGAAGGAAGGGACGCCTAAACAAAATTGAGCAATAATATGTTAACCAGAAGTGATGCGATCCGAGTGGACCGGGACTATCGGTACACCGGCGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAATCTCACAATTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACTACACTGTACCGCGACAGATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACGAGTATTACAATCCCTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTTCCGGGAAGCACGCCTCAATGGTGGAACATGTACTCCGAAGACTGCGCAAAAAAGTATCTCGGAGATTCGGCAGCACCTACAGCCGATACCTCAATCAAGCAAAACTGTTCATTGGGACNACCTNNCTGCGATCACTGTTGACGGTACG]


>consensus_9306#1 ATCCGNCACGATGAATGACAAGGTTCGAAGGAAGGGACGCCTAAACAAAATTGAGCAATA ATATGTTAACCAGAAGTGATGCGATCCGAGTGGACCGGGACTATCGGTACACCGGCGAGG ATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATTTTATG TCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAATCTCACAATTTCT TCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACTACACTGTACCGCGACAGATGCT TGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACGAGTATTACAATCCCTACT ACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCATCCGG ACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCTGTTCG GTGTCTTCCCGGCGGTGCATCAGATACCGTTTCCGGGAAGCACGCCTCAATGGTGGAACA TGTACTCCGAAGACTGCGCAAAAAAGTATCTCGGAGATTCGGCAGCACCTACAGCCGATA CCTCAATCAAGCAAAACTGTTCATTGGGACNACCTNNCTGCGATCACTGTTGACGGTACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9306#0      AAATGCAATGCGTTACCCAGCGTTACTAGACGGATTCAGCTCCTGCACCTTTATCTCCAA 60
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      CGTAAATACGCGGTT-TAAATGACAAGGTTCGAAGGAAGGGACGCCTAAACAAAATTGAG 119
consensus_9306#1      -----ATCCGNCACGATGAATGACAAGGTTCGAAGGAAGGGACGCCTAAACAAAATTGAG 55
                           ** **      * ******************************************

consensus_9306#0      CAATAGTATGTTAACCAGAAGTGATGCGATCCGAGTGGACCGGGACTATCGGTACACCGG 179
consensus_9306#1      CAATAATATGTTAACCAGAAGTGATGCGATCCGAGTGGACCGGGACTATCGGTACACCGG 115
                      ***** ******************************************************

consensus_9306#0      CGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATT 239
consensus_9306#1      CGAGGATGCCCATTCCTTCGTACGCTGCTGTTTGTGCCGGTGCTATACACCGTTTATATT 175
                      ************************************************************

consensus_9306#0      TTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAAACTCACAA 299
consensus_9306#1      TTATGTCGTGTCCAAAAAGGCGCTAGATGTGATTGCCAACACATTACCGCAATCTCACAA 235
                      **************************************************** *******

consensus_9306#0      TTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACCACACTGTACCGCGACAG 359
consensus_9306#1      TTTCTTCTGCGTTAATTGTTTACCTAAATCGTCAAGCACCACTACACTGTACCGCGACAG 295
                      ****************************************** *****************

consensus_9306#0      ATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACGAGTATTACAATCC 419
consensus_9306#1      ATGCTTGTTTAACAGTGACGAATATTTGTCCATGTTTCGCGGATACGAGTATTACAATCC 355
                      ************************************************************

consensus_9306#0      CTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCA 479
consensus_9306#1      CTACTACGGTGTGTATTACAACACGCCGCGCCTAATCCTCACGGAGAACATTCGGATTCA 415
                      ************************************************************

consensus_9306#0      TCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCT 539
consensus_9306#1      TCCGGACTACAAGAAAATAGTGCGCAAACCGCAGCCTGCCCTGGTGAAGATGCGGAAGCT 475
                      ************************************************************

consensus_9306#0      GTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTCC--GGAAGCACGCCTCAATGGTG 597
consensus_9306#1      GTTCGGTGTCTTCCCGGCGGTGCATCAGATACCGTTTCCGGGAAGCACGCCTCAATGGTG 535
                      ************************************ *  ********************

consensus_9306#0      GAA-ATGTACTCCGAG--CTGCGCAAAAA-GTATCGCG-AGATTCG-CAGCACCTACA-C 650
consensus_9306#1      GAACATGTACTCCGAAGACTGCGCAAAAAAGTATCTCGGAGATTCGGCAGCACCTACAGC 595
                      *** ***********   *********** ***** ** ******* *********** *

consensus_9306#0      CGATACCTCAATCAACCAAA--CGTTCAT--GGACA--CCTACTGC-ATCACTGTCGAGC 703
consensus_9306#1      CGATACCTCAATCAAGCAAAACTGTTCATTGGGACNACCTNNCTGCGATCACTGTTGACG 655
                      *************** ****   ******  ****   *   **** ******** **  

consensus_9306#0      GTACGCCGTCCGTCTACCAGTCGGTAAGGGAACGAACGCATCGAGTGCGGGAAGGCGAAG 763
consensus_9306#1      GTACG------------------------------------------------------- 660
                      *****                                                       

consensus_9306#0      GTGGCGGTACAGCTCTGTTCCCATCCGACACGATGCTGATGAGAACTGTCAGCACGCAGG 823
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      AATCGGCCGAGCCGAGCACATCGGAAAGTGACATGGGCGATGTCTCCTCGCTGCAGATTA 883
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      GCTCGCAATCGTACGGGGATGATGAGCGGGAGAACCGACTGGCCGCGCTACCAGCCAACA 943
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      GTCGGAGGCACGATCGATCGTTAGCGCGCAGGGCGGGCAACAGTCTAGCGGCTCATTCAA 1003
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      CATTAGCTCGCAGGACGTTGAGCTGGAGCGGGATCCGGAATTTGAACTGCCCGAAAGCAT 1063
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      AGGAAGTCTGCTATCGAACCAGAGCGTTCGGTCGATCGACAGCTCGCTGCGGCTGGATCA 1123
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      TCTAGTTACCCGGCGGCGTATCCACGACTCGCAGGAAGCGGGACCAAGCGGTTTGCAGCA 1183
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      GCTACAAAAGCAACCACCGGGCAAGGCAACGACACCAGAGCCGAAGCGTCGACGCATATC 1243
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      CACCGCTACTCCCATGAATCCGTCACCCGCGGAAGCGCAAACTACTCGAGATGTCAACGT 1303
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      AAGACTGCCACGACTGCCCGGAGGATAATGAAGCGGTCGGCTCTCTAGGCCCGTGGCGCA 1363
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      TTTAATAGTTAATTTTGTTTGTGTTTTCGTATTCGTTTCAATCAGACTGACAGACAGTGC 1423
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      CATGCAGAGTGAAAAATGTCTGTTTGAATGCCGTTATTTCCTATGAATTGCAACAAGATT 1483
consensus_9306#1      ------------------------------------------------------------
                                                                                  

consensus_9306#0      TCAATAAAGACTAGTTGAGACGGGTGT 1510
consensus_9306#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)