These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [ATCCCCCGAGGTTATATATCGCTAATATAATCTTAATACAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGNGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCTGTCGATCAGTATAAGACTATCATAGCCTGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCTGAGCAGGACATCCACTGGCGCACTNGTGGTGCAGGCGAAGTGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCTGTCGGGCAGTAGTAGGATGGGTGGCTGGCTGGACGGTAACCAACCATCAGCAAGGTCCGTGAAACAAAGTGTGTGTCTCCGAACCACCACCACACACCATTCATCACCCTCAACACCAACACACGAATGTTGTTCCGAACGCTGTTCAACAACCTCTCTCCTCTCGGTGCGCAAGGACATATACGCACACACACACACACATCCCCTTTGCAGGTTGGGGACGATCAAACGAATCGGAACAGCCAAGCAAGTGTGATGCAAC] [+] EMBL AL931654 [ATCCCCCGAGGTTATATATCGCTAATATAATCTTAATACAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGNGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCTGTCGATCAGTATAAGACTATCATAGCCTGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCTGAGCAGGACATCCACTGGCGCACTNGTGGTGCAGGCGAAGTGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCTGTCGGGCAGTAGTAGGATGGGTGGCTGGCTGGACGGTAACCAACCATCAGCAAGGTCCGTGAAACAAAGTGTGTGTCTCCGAACCACCACCACACACCATTCATCACCCTCAACACCAACACACGAATGTTGTTCCGAACGCTGTTCAACAACCTCTCTCCTCTCGGTGCGCAAGGACATATACGCACACACACACACACATCCCCTTTGCAGGTTGGGGACGATCAAACGAATCGGAACAGCCAAGCAAGTGTGATGCAAC] consensusID : consensus_932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [ACAGCAACAACAGTGACAGCAGCAGTAGGCTTAACAGTAGCAGCAATATAATCGCTAATAATAATCTTAATACCAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCGTCGATCAGTATAAGACTATCATAGCCGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCGAGCAGGACATCCACTGGCGCACGGTGGTGCAGGCGAAGGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCGTCGGGCAGTAGTAGGATGGGTGGCGGCGGACGGTAACCAACCATCAGCAAGGTCCGTGAAA] [-] EMBL AGA282058 [ACAGCAACAACAGTGACAGCAGCAGTAGGCTTAACAGTAGCAGCAATATAATCGCTAATAATAATCTTAATACCAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTGCGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGGACGACCAGCAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCGTCGATCAGTATAAGACTATCATAGCCGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCGAGCAGGACATCCACTGGCGCACGGTGGTGCAGGCGAAGGATAAGGAGCTAACCCTGCTCAAATCAGCCGGTGCCGTCGGGCAGTAGTAGGATGGGTGGCGGCGGACGGTAACCAACCATCAGCAAGGTCCGTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_932#0 --------------------------------ATCCCCCGAGGTTATATA-TCGCTAATA 27 consensus_932#1 ACAGCAACAACAGTGACAGCAGCAGTAGGCTTAACAGTAGCAGCAATATAATCGCTAATA 60 * * * * ***** ********* consensus_932#0 -TAATCTTAATAC-AATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTG 85 consensus_932#1 ATAATCTTAATACCAATAGCAGCGTTAATAGTAGTTTACACGAGCATGCGAACGACGGTG 120 ************ ********************************************** consensus_932#0 CGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGNGACGACCAG 145 consensus_932#1 CGGTGGTGAACAAGAACGGTGCCACCGGCGGCAGCGACAGTGGCGCCGAGG-ACGACCAG 179 ************************************************** ******** consensus_932#0 CAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACCTGTCGATCAGTATAAGACTAT 205 consensus_932#1 CAAACAATGGCGCTGCGGTACGAGCAGATGCAGAAAACC-GTCGATCAGTATAAGACTAT 238 *************************************** ******************** consensus_932#0 CATAGCCTGACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATCTGAGCAGGAC 265 consensus_932#1 CATAGCC-GACACGGAAAACATGCTGAAAAACCTCGAAGCGAAGGTGATC-GAGCAGGAC 296 ******* ****************************************** ********* consensus_932#0 ATCCACTGGCGCACTNGTGGTGCAGGCGAAGTGATAAGGAGCTAACCCTGCTCAAATCAG 325 consensus_932#1 ATCCACTGGCGCAC-GGTGGTGCAGGCGAAG-GATAAGGAGCTAACCCTGCTCAAATCAG 354 ************** *************** **************************** consensus_932#0 CCGGTGCCTGTCGGGCAGTAGTAGGATGGGTGGCTGGCTGGACGGTAACCAACCATCAGC 385 consensus_932#1 CCGGTGCC-GTCGGGCAGTAGTAGGATGGGTGGC--GGCGGACGGTAACCAACCATCAGC 411 ******** ************************* * ********************* consensus_932#0 AAGGTCCGTGAAACAAAGTGTGTGTCTCCGAACCACCACCACACACCATTCATCACCCTC 445 consensus_932#1 AAGGTCCGTGAAA----------------------------------------------- 424 ************* consensus_932#0 AACACCAACACACGAATGTTGTTCCGAACGCTGTTCAACAACCTCTCTCCTCTCGGTGCG 505 consensus_932#1 ------------------------------------------------------------ consensus_932#0 CAAGGACATATACGCACACACACACACACATCCCCTTTGCAGGTTGGGGACGATCAAACG 565 consensus_932#1 ------------------------------------------------------------ consensus_932#0 AATCGGAACAGCCAAGCAAGTGTGATGCAAC 596 consensus_932#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||