These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCATTGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGGCCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCTGCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAACACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGGAAATCAAACGATTGGCGCTTGGCGGGTGATCTTCTTCGTAACGATCGCTCTGTACGTGGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAACGGCCAAGATCAGTAATTGCAGTCGGAAGCGAAACACAACACAAGACTACAAACAGAAGGGCAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTTTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTGGAAAATGGTGCCCACTCTCTATTTTAATATT] [+] EMBL BX618140 [TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCATTGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGGCCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCTGCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAACACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGGAAATCAAACGATTGGCGCTTGGCGGGTGATCTTCTTCGTAACGATCGCTCTGTACGTGGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAACGGCCAAGATCAGTAATTGCAGTCGGAAGCGAAACACAACACAAGACTACAAACAGAAGGGCAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTTTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTGGAAAATGGTGCCCACTCTCTATTTTAATATT] consensusID : consensus_935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [AGCAGAATNGCCCCCAGGTTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGGCAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACGTAGGTGGAGATCGTTGCCTATTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAACACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTGGAAAATGGTACCCACTCTCTATTTAATATT] [+] EMBL AL932668 [AGCAGAATNGCCCCCAGGTTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGGCAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACGTAGGTGGAGATCGTTGCCTATTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAACACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTGGAAAATGGTACCCACTCTCTATTTAATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_935#0 TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCAT 60 consensus_935#1 ------------------------------------------------------------ consensus_935#0 TGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGG 120 consensus_935#1 ------------------------------------------------------------ consensus_935#0 CCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCT 180 consensus_935#1 ------------------------------------------------------------ consensus_935#0 GCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAA 240 consensus_935#1 ------------------------------------------AGCAGAATNGCCCCCAGG 18 * * * consensus_935#0 CACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGG 300 consensus_935#1 TTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGG 78 ************* ******* ******* ******************** consensus_935#0 -AAATCAAACGATTGGCGCT-TGGCGGG-TGATCT-TCTTCGTAACGATCGCTCTGTACG 356 consensus_935#1 CAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACG 138 ******************* **** ** ****** ************************ consensus_935#0 T-GGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAG 415 consensus_935#1 TAGGTGGAGATCGTTGCCTATT-GCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAG 197 * ******************** ************************************* consensus_935#0 GGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACG 475 consensus_935#1 GGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACG 257 ************************************************************ consensus_935#0 AAGGAATCGAAACAGAGCTACAAC-GGCCAAGATCAGTAATTGCAGTC-GGAAGC-GAAA 532 consensus_935#1 AAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAA 317 *********************** *********************** *** ** **** consensus_935#0 CACAACACAAGACTACAAACAGAAGGG-CAGCAGGGACAAGGGCTGGCGCAACACACTTT 591 consensus_935#1 CACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTT 377 ********************** **** ******************************** consensus_935#0 TAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCAC 651 consensus_935#1 TAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCAC 437 ***************************** ****************************** consensus_935#0 TTCTTGTGTTTTGTTCGT-TTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTG 710 consensus_935#1 TTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTG 497 ****************** ***************************** *********** consensus_935#0 GAAAATGGTGCCCACTCTCTATTTTAATATT 741 consensus_935#1 GAAAATGGTACCCACTCTCTATTT-AATATT 527 ********* ************** ****** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||