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Anopheles gambiae
cluster # 935 cluster # 935       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_935#0 length = 741 sequences # 1  
consensus_935#1 length = 527 sequences # 1  

consensusID : consensus_935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 741
fasta sequence
                              [TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCATTGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGGCCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCTGCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAACACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGGAAATCAAACGATTGGCGCTTGGCGGGTGATCTTCTTCGTAACGATCGCTCTGTACGTGGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAACGGCCAAGATCAGTAATTGCAGTCGGAAGCGAAACACAACACAAGACTACAAACAGAAGGGCAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTTTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTGGAAAATGGTGCCCACTCTCTATTTTAATATT]

[+] EMBL BX618140             [TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCATTGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGGCCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCTGCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAACACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGGAAATCAAACGATTGGCGCTTGGCGGGTGATCTTCTTCGTAACGATCGCTCTGTACGTGGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAACGGCCAAGATCAGTAATTGCAGTCGGAAGCGAAACACAACACAAGACTACAAACAGAAGGGCAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTTTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTGGAAAATGGTGCCCACTCTCTATTTTAATATT]


>consensus_935#0 TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCAT TGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGG CCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCT GCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAA CACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGG AAATCAAACGATTGGCGCTTGGCGGGTGATCTTCTTCGTAACGATCGCTCTGTACGTGGT GGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGA CAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGA ATCGAAACAGAGCTACAACGGCCAAGATCAGTAATTGCAGTCGGAAGCGAAACACAACAC AAGACTACAAACAGAAGGGCAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCA TGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGT TTTGTTCGTTTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTGGAAAATGGTG CCCACTCTCTATTTTAATATT



consensusID : consensus_935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence
                              [AGCAGAATNGCCCCCAGGTTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGGCAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACGTAGGTGGAGATCGTTGCCTATTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAACACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTGGAAAATGGTACCCACTCTCTATTTAATATT]

[+] EMBL AL932668             [AGCAGAATNGCCCCCAGGTTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGGCAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACGTAGGTGGAGATCGTTGCCTATTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAACACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTGGAAAATGGTACCCACTCTCTATTTAATATT]


>consensus_935#1 AGCAGAATNGCCCCCAGGTTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGT TGGACAGATTACGCACGGCAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCG TAACGATCGCTCTGTACGTAGGTGGAGATCGTTGCCTATTGCTGCTGGCTTCGGGCGAAG AGCAACCATGGAACAAGGGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAG CCACACCGCTGAACACGAAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTG CAGTCTGGATGCTGAAACACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGG CTGGCGCAACACACTTTTAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTC CATCTCCATCTTATCACTTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATT ACCGTAGTAGGCCTGTGGAAAATGGTACCCACTCTCTATTTAATATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_935#0      TGCGCTGCGCTCCCGGGGCAAGATCACGACAACGATTGCGCGCAAAACGGCCACCTTCAT 60
consensus_935#1      ------------------------------------------------------------
                                                                                 

consensus_935#0      TGCGTCCGCCGTGCCGATGGGCTGTCTGCTGGCGCTCTGCTACATCGGCTGCCAGCGCGG 120
consensus_935#1      ------------------------------------------------------------
                                                                                 

consensus_935#0      CCTGGCCGTGGCACTGATGACGATCGGCATTACCGCGATCGGTGGCATGTTCTGTGGGCT 180
consensus_935#1      ------------------------------------------------------------
                                                                                 

consensus_935#0      GCTCTCGAACCACATCGACATTGCACCGAACTATGCCGGCATACTGATGGCGATTACGAA 240
consensus_935#1      ------------------------------------------AGCAGAATNGCCCCCAGG 18
                                                               *        *    *   

consensus_935#0      CACGGCCGCCACGCTCTCCGGCATCATTGTGCCCATCTTCGTTGGACAGATTACGCACGG 300
consensus_935#1      TTATTTTTTCACGCTCTCCGGCCTCATTGTTTCCATCTTTGTTGGACAGATTACGCACGG 78
                              ************* *******  ******* ********************

consensus_935#0      -AAATCAAACGATTGGCGCT-TGGCGGG-TGATCT-TCTTCGTAACGATCGCTCTGTACG 356
consensus_935#1      CAAATCAAACGATTGGCGCTATGGCNGGGTGATCTATCTTCGTAACGATCGCTCTGTACG 138
                      ******************* **** ** ****** ************************

consensus_935#0      T-GGTGGAGATCGTTGCCTATTTGCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAG 415
consensus_935#1      TAGGTGGAGATCGTTGCCTATT-GCTGCTGGCTTCGGGCGAAGAGCAACCATGGAACAAG 197
                     * ******************** *************************************

consensus_935#0      GGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACG 475
consensus_935#1      GGCGACAAGCCGGCCAGCTCGATCGAAGCGGCCGAAGCGGAAGCCACACCGCTGAACACG 257
                     ************************************************************

consensus_935#0      AAGGAATCGAAACAGAGCTACAAC-GGCCAAGATCAGTAATTGCAGTC-GGAAGC-GAAA 532
consensus_935#1      AAGGAATCGAAACAGAGCTACAANCGGCCAAGATCAGTAATTGCAGTCTGGATGCTGAAA 317
                     ***********************  *********************** *** ** ****

consensus_935#0      CACAACACAAGACTACAAACAGAAGGG-CAGCAGGGACAAGGGCTGGCGCAACACACTTT 591
consensus_935#1      CACAACACAAGACTACAAACAGCAGGGACAGCAGGGACAAGGGCTGGCGCAACACACTTT 377
                     ********************** **** ********************************

consensus_935#0      TAGCTTTCATGTACGATATTGATGGGGTAGCGCTCCATATCTCCATCTCCATCTTATCAC 651
consensus_935#1      TAGCTTTCATGTACGATATTGATGGGGTANCGCTCCATATCTCCATCTCCATCTTATCAC 437
                     ***************************** ******************************

consensus_935#0      TTCTTGTGTTTTGTTCGT-TTTCGATCGGTTGATCGGTCAATTACCGTGGTAGGCCTGTG 710
consensus_935#1      TTCTTGTGTTTTGTTCGTATTTCGATCGGTTGATCGGTCAATTACCGTAGTAGGCCTGTG 497
                     ****************** ***************************** ***********

consensus_935#0      GAAAATGGTGCCCACTCTCTATTTTAATATT 741
consensus_935#1      GAAAATGGTACCCACTCTCTATTT-AATATT 527
                     ********* ************** ******




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)