These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 490 fasta sequence [GGATGCAGTCGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCT-GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT-GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA--T-TGAAG-T-GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGC] [+] EMBL CNS08TDU [GGATGCAGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCT GCGAA ACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA G CCAGG G GA GGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGC] [+] EMBL BM609612 [ cCGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCTTCTGTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCAGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG ] [+] EMBL BM596117 [ ccgGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG ] [+] EMBL BM593423 [ ccGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATTTAAAGCCGAT ] [+] EMBL BM612408 [ ccGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAG ] [+] EMBL BM601657 [ ccGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAAGGTCTTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACTAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGATGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCTAGGGAGATGGAGGTGCAAGTATCGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAGGGACGAATAAATCTGTTATTTATTGCCGATT ] [+] EMBL BM636521 [ ccgGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATTTAAAGCCGAT ] [+] EMBL BM646465 [ ccGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAAGGTCTTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACTAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGATGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCTAGGGAGATGGAGGTGCAAGTATCGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAGGGACGAATAAATCTGTTATTTATTGCCGATTAcg ] [+] EMBL BM594623 [ ccgCGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATTTAAAGCCG ] [+] EMBL BM624764 [ ccgCGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCTTCTGTTTTCCTGTACGCT GCGAAGCACCGATAAAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCAGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG ] [+] EMBL BM586830 [ ccgGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG ] [-] EMBL CNS08NWF [ ctCAAGGTCTTTAGTTTCTTCTTTTTTCCTGTACGCTGGCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATAATTGCAAATGCACCAGCG ] [-] EMBL CNS08L4P [ CACCGATAGAAAACTGCACCTAAAGATGCCCTGCCAGTGCTGTGGAAATTATTGCAAATGCACCAGCGGGTGTGGCAGTGGTAAATCCTGTGCGACGGATTGCAAATGTGCCTCGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGTGGTTGCTGCGGCAAATGAGGTA T TGAAG T TAGGGGCAAGTATTGATGGGGAGTGCTACGAATCTCGGCTGAAGGCATGTCG ] consensusID : consensus_9502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 482 fasta sequence [AGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGCTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGACACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCGGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCCGCGGGCC] [+] EMBL CNS08DKN [AGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGCTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGACACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCGGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCCGCGGGCC] [+] EMBL CNS08NWE [ CGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCG TGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGACACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGggggggggg ] [-] EMBL CNS08DKO [ GTGGAAATGATTGCAAATGCACCGGCGGGTGTGGGAGTGGCCAGTCCTGTGCGACGGATTGCAAATGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGGGGGCAAGTTTTGt ] [-] EMBL BM606128 [ ctagATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9502#0 GGATGCAGTCGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCG-TG 59 consensus_9502#1 ------AGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGCTG 54 *** *********************************************** ** consensus_9502#0 TGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTAC 119 consensus_9502#1 TGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTAC 114 ************************************************************ consensus_9502#0 GTGCCCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGAAGCACCGATAGAAAAC 179 consensus_9502#1 GTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGA--CACCGATAGAAAAC 172 **** *************************************** ************** consensus_9502#0 TGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTG 239 consensus_9502#1 TGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCGGCGGATGTG 232 ************************************************** ********* consensus_9502#0 GCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGG 299 consensus_9502#1 GCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGG 292 *********** ************************************************ consensus_9502#0 AAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTATTGAAGTGAGGGGCAAGTATTGATGGG 359 consensus_9502#1 AAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGG-CAAGTATTGATGGG 351 ********************************* * * ***** ************** consensus_9502#0 AAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAA 419 consensus_9502#1 AAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAA 411 ************************************************************ consensus_9502#0 TCTGTTATTTAAAGCCGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGT 479 consensus_9502#1 TCTGTTATTTAAAGCCGA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGT 466 ****************** ******************************** **** consensus_9502#0 GCCCGAGCTGC----- 490 consensus_9502#1 GCCCGACCCGCGGGCC 482 ****** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||