These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 962 fasta sequence [GGCAGAATCGGCACGNGGATGTTTATTTTTCACAAAGGCTGCTACACCAATAGGCTCCATTTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTAAACAACAGTGCCAAAACAATT-CCGCATACAAAATG-TGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAA-GTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGC-ACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGC-AA-TTAAGCTACGCAATCGTACAAA-ACATAAGTGCTTT-AATC-GTCTATGCATGAAATGGTCAGTACGACCAG-CAAACG--TATT-ATTC-ATC-GC-TGC-AGAG--CCATCCAGA-GAAACATAACAA-GCATGATC-GA-TAC-ATAACATTTGCT-CA-GGAA-CAATTACCACTGCT-CCGCTCTTCATTCGAAGGCGCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATT-GCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATTAAGGATTCCATTAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTTGCAAATGTTACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTGCCAGCTATTACGCATACAGATATTTGCTCCCATCT] [+] EMBL BX469831 [GGCAGAATCGGCACGNGGATGTTTATTTTTCACAAAGGCTGCTACACCAATAGGCTCCATTTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTAAACAACAGTGCCAAAACAATT CCGCATACAAAATGCTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAACGTTTTNACATCACATTGTGAATCTCTCCATAACTATACGCTATGCGACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGCNAATTTAAGCTACGCAATCGTACAAAGACATAAGTGCTTTAAATCGGTCTATGCATGAAATGGTCAGTACGACCAGACAAACGGTTATTGATTCAATCGGCTTGCAAGAGGACAATCCAGAGGAAACATANCAAGGCATGATCNGATTACNCTAACATTTGCTCCAGGGAACCANTTANCACTGGTGCGGGTCTTCATTCGAAGGNGCTT ] [+] EMBL BM624677 [ ccgATTTTTCACAAAGGCTGCTACACCAATAGGCTCCATTTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTAAACAACAGTGCCAAAACAATT CCGCATACAAAATG TGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTTGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAA GTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGC ACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAAC AA TTAAGCTACGCAATCGTACAAA ACATAAGTGCTTT AATC GTCTATGCATGAAATGGTCAGTACGACCAG CAAACG TATT ATTC ATC GC TGC AGAG CCACCCAGA GAAACATAACAA GCATGATC GA TAC AT ACATTTGCT CA GGAA CAATTACCACTGCT CCGCTCTTCATTCGAAGGCGCTTCATTGTCGTGTTG ] [+] EMBL BM593079 [ ccgCACCAATAGGCTCCATTTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCCTTAAACAACAGTGCCAAAACAATT CCGCATACAAAATG TGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAA GTTTTTACATCACTTTGTGAATCTCTCCATAACTATACGCTATGC ACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGC AA TTAAGCTACGCAATCGTACAAA ACATAAGTGCTTT AATC GTCTATGCATGAAATGGTCAGTACGACCAG CAAACG TATT ATTC ATC GC TGC AGAG CCATCCAGA GAAACATAACAA GCATGATA GA TAC ATAA ATTTGCT CA GGAA CAATTACCACTGCG CCGCTCTTCATTCGAAGGTGCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATTGGCCGTAGCCGTTTACTA ] [+] EMBL BX607706 [ TAAATTATTTCCCTTTAAACAACAGTGCCAAAACAATTACCGCATACAAAATG TGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAAGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAA GTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGC ACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGC AA TTAAGCTACGCAATCGTACAAA ACATAAGTGCTTT AATC GTCTATGCATGAAATGGTCAGT ] [+] EMBL BM611881 [ ccgTAGGAATTTACTTTGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAA GTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGC ACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAAC AA TTAAGCTACGCAATCGTACAAA ACATAAGTGCTTT AATC GTCTATGCATGAAATGGTCAGTACGACCAG CAAACG TATT ATTC ATC GC TGC AGAG CCACCCAGA GAAACATAACAA GCATGATC GA TAC AT ACATTTGCT CA GGAA CAATTACCACTGCT CCGCTCTTCATTCGAAGGCGCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATT GCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATTAAGGATTCCATTAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTTGCAAATGTTACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTGCCAGCTATTACGCATACAGATATTTGCTCCCATCT] consensusID : consensus_9511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 844 fasta sequence [CCGCCGCGCAAGACGTGTTTTCTAAAGGTTCTTCGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAATTATTGTCTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCTAAGATTAAGGATTCCATTAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTTGCAAATGTTACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTGCCAGCTATTACGCATACAGATATTTGCTCCCATCTATACAAACACC----TAATACTATTCCGTATAAAAC--G----AAGCATGTAACGCGCCTACCTCGAAGGTGGGCCTACAATCACAAACAGAGATCTGGTATTAATCTCAGCAGATTGCTAATTTATTAAATCCGCGATTCAAAGGAAGCTTTTTATGAAGAATTTTTGCGATATTAATTGAATAAAATTTCTATTTAACATGTAATCGTCTAATTTTGCTGAGTTTCATGTTTCTTGTGTATCTCTGTTCAGAGATCGCTTAACAACTAGCACAACTGAAATACCCAGATTTGGTAACAGATATCTGATCCTCAGTATGCTTTGCATGCATGAAATAACCGTTGCTCCTCTACCAATGGATTCATCCCAAATTTCCGAAATCCAACATACTTCTTGGTTGTGGTAAGTTTTTGAAATCACGAAAAATCAAATACACACGCCTAATAGCATTTCTGATTATTAATTTCAGTCTCATTTGTACGCCCCCCCC] [+] EMBL BM602231 [ CCGCGCAAGACGTGTTTTCTAAAGGTTCTTCGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAATTATTGTCTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGGTCTAAGATTAAGGATTCCATTAAAGATGGCTTTAAAAAGCTAAGCGACAATTGAGCGTGTTTGCAAATGTTACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTGCCAGCTATTACGCATACAGATATTTGCTCCCATCTATACAAACACC TAATACTATTCCGTATAAAAC G AAGCATGTAACGCGCCTACCTCGAAGGTGGGCCTACAATCACAAACAGAGATCTGGTATTAATCTCAGCAGATTGCTAATTTATTAAATCCGCGATTCAAAGGAAGCTTTTTATGAAGAATTTTTGCGATATTAATTGAATAAAATTTCTATTTAACATGTAATCGTCT ] [+] EMBL BM578807 [ CCG GCAAGACGTGTTTTCTAAAGGTTCTTCGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAATTATTCTCTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCTAAGATTAAGGATTCCATTAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTTGCAACTGTTACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTGCCAGCTATTACGCATACAGATATTTGCTCCCATCTATACAAACACCTACATAATACTATTCCGTATAAAACATGTATAAAGCATGTAACGCGCCTACCTCGAAGGTGGGCCTACAATCACAAACAGAGATCTGGTATTAATCTCAGCAGATTGCTAATTTATTAAATCCGCGATTCAAAGGAAGCTTTTTATGAAGAATTTT ] [+] EMBL BM625514 [ccggatCGCAAGACGTGTTTTCTAAAGGTTCTTCGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAATTATTGTCTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATTAAGGATTCCATTAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTTGCAAATGTTACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTGCCAGCTATTACGCATACAGATATTTGCTCCCATCTATACAAACACCTACATAATACTATTCCGTATAAAAC G AAGCATGTAACGCGCCTACCTCGAAGGTGGGCCTACAATCACAAACAGAGATCTGGTATTAATCTCAGCAGATTGCTAATTTATTAAATCCGCGATTCAAAGGAAGCTTTTTATGAAGAATTTTTGCGATATT ] [+] EMBL BX609788 [ AGGTTCTTTGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAATTATTGTCTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATTAAGGATTCCATAAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTTGCAACTGTTACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTGCCAGCTATTACGCATACAGATATTTGCTCCCATCTATACAAACACC TAATACTGTTCCGTATAAAAC G AAGCATGTAACGCGCCTACCTCGAAGGTGGGCCTACAATCACAAACAGAGATCTGGTATTAATCTCAGCACATTGCTAATTTATTAAATCCGCGATTCAAAGGAAGCTTTTTATGAAGAATTTTTGCGATATTAA ] [+] EMBL CNS08PXM [ CTAATTTATTAAATCCGCGATTCAAAGGAAGCTTTTTATGAAGAATTTTTGCGATATTAATTGAATAAAATTTCTATTTAACATGTAATCGTCTAATTTTGCTGAGTTTCATGTTTCTTGTGTATCTCTGTTCAGAGATCGCTTAACAACTAGCACAACTGAAATACCCAGATTTGGTAACAGATATCTGATCCTCAGTATGCTTTGCATGCATGAAATAACCGTTGCTCCTCTACCAATGGATTCATCCCAAATTTCCGAAATCCAACATACTTCTTGGTTGTGGTAAGTTTTTGAAATCACGAAAAATCAAATACACACGCCTAATAGCATTTCTGATTATTAATTTCAGTCTCATTTGTACGCCCCCCCC] consensusID : consensus_9511#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [CCGCCCACGCGTCCGGTTTATTTTTCACAAAGGCTGCTACACCAATAGGCTCCATTTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCCTTAAACAACAGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTTTTTACATCACTTTGTGAATCTCTCCATAACTATACGCTATGCACACCCGAAAAAAGTGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGCAATTAAGCTACGCAATCGTACAAAACATAAGTGCTTTAATCGTCTATGCATGAAATGGTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCATCCAGAGAAACATAACAAGCATGATAGATACATAAATTTGCTCAGGAACAATTACCACTGCGCCGCTCTTCATTCGAAGGTGCTTCATT] [+] EMBL BM587478 [CCGCCCACGCGTCCGGTTTATTTTTCACAAAGGCTGCTACACCAATAGGCTCCATTTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCCTTAAACAACAGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTTTTTACATCACTTTGTGAATCTCTCCATAACTATACGCTATGCACACCCGAAAAAAGTGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGCAATTAAGCTACGCAATCGTACAAAACATAAGTGCTTTAATCGTCTATGCATGAAATGGTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCATCCAGAGAAACATAACAAGCATGATAGATACATAAATTTGCTCAGGAACAATTACCACTGCGCCGCTCTTCATTCGAAGGTGCTTCATT] [+] EMBL BM610544 [CCGCCCACGCGTCCGGTTTATTTTTCACAAAGGCTGCTACACCAATAGGCTCCATTTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTAAACAACAGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTTGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAACAATTAAGCTACGCAATCGTACAAAACATAAGTGCTTTAATCGTCTATGCATGAAATGGTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCACCCAGAGAAACATAACAAGCATGATCGATACATAc ] consensusID : consensus_9511#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [CGCCCCGAGGNNAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGCAATTAAGCTACGCAATCGTACAAAACATAAGTGCTTTAATCGTCTATGCATGAAATGGTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCATCCAGAGAACCATAACAAGCATGATAGATACATAAATTTGCTCAGGAACAATTACCACTGCTCCGCTCTTCATTCGAAGGTGCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATTCAAGGATTCCATAAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTGCAACTGTTACAACACACAACATAGAAGTTGCTAC] [+] EMBL AL693521 [CGCCCCGAGGNNAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCACACCCGAAAAAAGGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGCAATTAAGCTACGCAATCGTACAAAACATAAGTGCTTTAATCGTCTATGCATGAAATGGTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCATCCAGAGAACCATAACAAGCATGATAGATACATAAATTTGCTCAGGAACAATTACCACTGCTCCGCTCTTCATTCGAAGGTGCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATTCAAGGATTCCATAAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTGCAACTGTTACAACACACAACATAGAAGTTGCTAC] [+] EMBL BX609596 [ GAATCTCTCCATAACTATACGCTATGCACACCCGAAAAAATGGTTAACTACCATTGTAAGCCAACGATAGTGGCCTACAGCAATTAAGCTACGCAATCGTACAAAACATAAGTGCTTTAATCGTCTATGCATGAAATGGTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCATCCAGAGAACCATAACAAGCATGATAGATACATAAATTTGCTCAGGAACAATTACCACTGCTCCGCTCTTCATTCGAAGGTGCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCTTCCGATGT ] consensusID : consensus_9511#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [AGAATCGCCCGAGGTNAATAGGCTCCATTTTCATAACCTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCCTTAAACAACAGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCACACCCGAAACAAAGGGTTAACTACCATTGTAAGCCAACGACTAGCTGGCCTACAGCAACTTAAGCTACGCAATCGCTACACACACACATAAGTGCTTTAACTCGTCTATGCATGACACATGGCTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCATCCAGAGCAACCATACCA] [+] EMBL AL931864 [AGAATCGCCCGAGGTNAATAGGCTCCATTTTCATAACCTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCCTTAAACAACAGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTTTTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCACACCCGAAACAAAGGGTTAACTACCATTGTAAGCCAACGACTAGCTGGCCTACAGCAACTTAAGCTACGCAATCGCTACACACACACATAAGTGCTTTAACTCGTCTATGCATGACACATGGCTCAGTACGACCAGCAAACGTATTATTCATCGCTGCAGAGCCATCCAGAGCAACCATACCA] consensusID : consensus_9511#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [GTTCTTTGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAATTATTGTCTGGTAAATAATCAAGTTTGTTGTTGTATCGGGTTTCAAACAAGTGAATAGAAATCAGTACTTTCCTTTCGTACGCCATAGCCATCGATCGTCCAAATGAGCAACTTCATTCCAGAACAATGTCATATAAATCAGAGGAAAAGGCTTTTACCGTCGTTTACCGAAAGTTTACCGTCGATTACTAACATAAAAATGATTTCCGTTTTTACAAGCATGTTTTGCTCTTCCGCTTGAAATCTTATATTGTGAAAGCAAAACGTGAGTGTAGTGTACACTTTTGCACGGCTCTTCCCCCACTCCCTCGTTTCAACTCAAGGTTATTCTTGTTGAACAAAGTTAATTGAGTTTTTGTGCACAATCAAATTACATCATGTGCAAATAAAACGTGGGAAATGTGTCCATGAAATAGAAAAATGGACTCAACTTTTAATTGCAAACAAACGTATGAAAAGGAAATTCCCCAGCGGAGTCAGAATATGTTACGCTTC] [+] EMBL BX615695 [GTTCTTTGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAATTATTGTCTGGTAAATAATCAAGTTTGTTGTTGTATCGGGTTTCAAACAAGTGAATAGAAATCAGTACTTTCCTTTCGTACGCCATAGCCATCGATCGTCCAAATGAGCAACTTCATTCCAGAACAATGTCATATAAATCAGAGGAAAAGGCTTTTACCGTCGTTTACCGAAAGTTTACCGTCGATTACTAACATAAAAATGATTTCCGTTTTTACAAGCATGTTTTGCTCTTCCGCTTGAAATCTTATATTGTGAAAGCAAAACGTGAGTGTAGTGTACACTTTTGCACGGCTCTTCCCCCACTCCCTCGTTTCAACTCAAGGTTATTCTTGTTGAACAAAGTTAATTGAGTTTTTGTGCACAATCAAATTACATCATGTGCAAATAAAACGTGGGAAATGTGTCCATGAAATAGAAAAATGGACTCAACTTTTAATTGCAAACAAACGTATGAAAAGGAAATTCCCCAGCGGAGTCAGAATATGTTACGCTTC] consensusID : consensus_9511#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTAAACAACAGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTTGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCT] [+] EMBL BM596913 [CCGCGGACGCGTGGGCGGACGCGTGGGTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTAAACAACAGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGCTGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATCGCTGCAGCTGTCGCATTAGGAATTTACTTTGGACTGCTGAACGTGGACGATACAGCTCCGAATGTATCGGACTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATTAAGGACAAGTTCCAATAGTTCCTTTCCATATTCTATGGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGAGTCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9511#0 GGCAGAATCGGCACGNGGATGTTTATTTTTCACAAAGGCTGCTACACCAATAGGCTCCAT 60 consensus_9511#3 ------------------------------------------------------------ consensus_9511#2 -----CCGCCCACGCGTCCGGTTTATTTTTCACAAAGGCTGCTACACCAATAGGCTCCAT 55 consensus_9511#4 -------------------------------AGAATCGCC-CGAGGTNAATAGGCTCCAT 28 consensus_9511#6 -----------------------------------CCGCGGACGCGTGGGCGGACGCGTG 25 consensus_9511#1 ----------------------------CCGCCGCGCAAGACGTGTTTTCTAAAGGTTCT 32 consensus_9511#5 -------------------------------------------------------GTTCT 5 consensus_9511#0 TTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTA-AACAAC 119 consensus_9511#3 ------------------------------------------------------------ consensus_9511#2 TTTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCCTTA-AACAAC 114 consensus_9511#4 TTTCATAACCT-GTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCCTTA-AACAAC 86 consensus_9511#6 GGTCATAACCTTGTAAACATTATTGTTGATAAAGTTTAAATTATTTCCCTTTA-AACAAC 84 consensus_9511#1 TCGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAAT 92 consensus_9511#5 TTGAAAAGTTTTGCAAGCCGTAGGGAAAGGAGTTGCAAAAATGTGTCACTGTGGAACAAT 65 consensus_9511#0 -AGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGC 178 consensus_9511#3 ------------------------------------------------------------ consensus_9511#2 -AGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGC 173 consensus_9511#4 -AGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGC 145 consensus_9511#6 -AGTGCCAAAACAATTCCGCATACAAAATGTGCAAATGCATCGCTGGAACATGTGTCTGC 143 consensus_9511#1 TATTGTCTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGAGTTAT 152 consensus_9511#5 TATTGTCTGGTAAATA------ATCAAGTTTGTTGTTGTATCGGGTTTCAAACAAGTGAA 119 consensus_9511#0 TGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATC 238 consensus_9511#3 ------------------------------------------------------------ consensus_9511#2 TGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATC 233 consensus_9511#4 TGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATC 205 consensus_9511#6 TGTTGCTGCCAATGCGCTATGAGCATGTTCATATCGCTGCTGTTCGTCTTCATACTGATC 203 consensus_9511#1 TCACGTCGATGA-GTCCGCTTCCGATGTAATAAAGGACACTGGATCTAAGATTAAGGATT 211 consensus_9511#5 TAGAAATCAGTACTTTCCTTTCGTACGCCATAGCCATCGATCGTCC--AAATGAGCAACT 177 consensus_9511#0 GCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTG------GACGATACA 292 consensus_9511#3 --------CGCCCCGAGGNNAATTTACTTCGGACTGCTGAACGTG------GACGATACA 46 consensus_9511#2 GCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTG------GACGATACA 287 consensus_9511#4 GCTGCAGCTGTCGCATTAGGAATTTACTTCGGACTGCTGAACGTG------GACGATACA 259 consensus_9511#6 GCTGCAGCTGTCGCATTAGGAATTTACTTTGGACTGCTGAACGTG------GACGATACA 257 consensus_9511#1 CCATTAAAGATGGCTTTAAAAAGTTAAGC--GACAATTGAGCGTGTTTGCAAATGTTACA 269 consensus_9511#5 TCATTCCAGAACAATGTCATA---TAAATCAGAGGAAAAGGCTTTT-----ACCGTCGTT 229 * ** ** * * * consensus_9511#0 -GCTCCGAATGTATCGGA--CTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATT 349 consensus_9511#3 -GCTCCGAATGTATCGGA--CTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATT 103 consensus_9511#2 -GCTCCGAATGTATCGGA--CTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATT 344 consensus_9511#4 -GCTCCGAATGTATCGGA--CTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATT 316 consensus_9511#6 -GCTCCGAATGTATCGGA--CTTCGTGCATAAAACTGGCGATTCTATAAAAGATAGCATT 314 consensus_9511#1 -ACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACGTG 328 consensus_9511#5 TACCGAAAGTTTACCGTCGATTACTAACATAAAAATGATTTCCGTTTTTACAAGCATGTT 289 * * ** * * * * * * consensus_9511#0 AAGGACAAGTTCCA-ATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTT 408 consensus_9511#3 AAGGACAAGTTCCA-ATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTT 162 consensus_9511#2 AAGGACAAGTTCCA-ATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTT 403 consensus_9511#4 AAGGACAAGTTCCA-ATAGTTCCTTTCCATATTCTATGGGTACATCATAATTTTAAAGTT 375 consensus_9511#6 AAGGACAAGTTCCA-ATAGTTCCTTTCCATATTCTATGGTTGCATTCT----------TT 363 consensus_9511#1 CCAGCTATTACGCATACAGATATTTGCTCCCATCTATACAAACACC-TAATACTATTCCG 387 consensus_9511#5 TT-GCTCTTCCGCT--TGAAATCTTATATTGTGAAAGCAAAACGTGAGTGTAGTGTACAC 346 * * ** * * consensus_9511#0 TTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCA--CACCCGAAA-AAAGG 465 consensus_9511#3 TTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCA--CACCCGAAA-AAAGG 219 consensus_9511#2 TTTACATCACTTTGTGAATCTCTCCATAACTATACGCTATGCA--CACCCGAAA-AAAGT 460 consensus_9511#4 TTTACATCACATTGTGAATCTCTCCATAACTATACGCTATGCA--CACCCGAAACAAAGG 433 consensus_9511#6 TCGCTATCGC--------CATTGCCGTAGCCGTTTACTATGGAGTTATTCACGTCGATGA 415 consensus_9511#1 TATAAAACGAAGCATGTAACGCGCC-TACCTCGAAGGTGGGCCTACAATCACAAACAGAG 446 consensus_9511#5 TTTTGCACGGCTCTTCCCCCACTCCCTCGTTTCAACTCAAGGTTATTCTTGTTGAACAAA 406 * * ** * * consensus_9511#0 GTTAACTACCATTGTAAGCCAACGA--TAGTGGCCTA--CAGCAA-TTAAGCTACGCAAT 520 consensus_9511#3 GTTAACTACCATTGTAAGCCAACGA--TAGTGGCCTA--CAGCAA-TTAAGCTACGCAAT 274 consensus_9511#2 GTTAACTACCATTGTAAGCCAACGA-TAG-TGGCCTA--CAGCAA-TTAAGCTACGCAAT 515 consensus_9511#4 GTTAACTACCATTGTAAGCCAACGACTAGCTGGCCTA--CAGCAACTTAAGCTACGCAAT 491 consensus_9511#6 GTCCGCT----------------------------------------------------- 422 consensus_9511#1 ATCTGGTATTAATCTCAGCAGATTGCTAATTTATTAAATCCGCGATTCAAAGGAAGCTTT 506 consensus_9511#5 GTTAATTG--AGTTTTTGTGCACAATCAAATTACATCATGTGCAAATAAAACGTGGGAAA 464 * * consensus_9511#0 CG-TACAAA---ACATAAGTGCT--TTAA---TCGTCTATGCATGAAAT---GGTCAGTA 568 consensus_9511#3 CG-TACAAA---ACATAAGTGCT--TTAA---TCGTCTATGCATGAAAT---GGTCAGTA 322 consensus_9511#2 CG-TACAAA---ACATAAGTGCT--TTAA---TCGTCTATGCATGAAAT---GGTCAGTA 563 consensus_9511#4 CGCTACACACACACATAAGTGCT--TTAAC--TCGTCTATGCATGACACATGGCTCAGTA 547 consensus_9511#6 ------------------------------------------------------------ consensus_9511#1 TTATGAAGAATTTTTGCGATATTAATTGAA--TAAAATTTCTATTTAACATGTAATCGTC 564 consensus_9511#5 TGTGTCCATGAAATAGAAAAATGGACTCAACTTTTAATTGCAAACAAACGTATGAAAAGG 524 consensus_9511#0 CGACCAGCAAACGTATTATTCATCGC-TGCAGAGCCATCCAGAGAAAC-ATAACAAGCAT 626 consensus_9511#3 CGACCAGCAAACGTATTATTCATCGC-TGCAGAGCCATCCAGAGAACC-ATAACAAGCAT 380 consensus_9511#2 CGACCAGCAAACGTATTATTCATCGC-TGCAGAGCCATCCAGAGAAAC-ATAACAAGCAT 621 consensus_9511#4 CGACCAGCAAACGTATTATTCATCGC-TGCAGAGCCATCCAGAGCAACCATACCA----- 601 consensus_9511#6 ------------------------------------------------------------ consensus_9511#1 TAATTTTGCTGAGTTTCATGTTTCTTGTGTATCTCTGTTCAGAGATCGCTTAACAACTAG 624 consensus_9511#5 AAATTCCCCAGCGGAGTCAGAATATGTTACGCTTC------------------------- 559 consensus_9511#0 GATCGATACATAACATTTGCTCAGGAACAATTACCACTGCTCCGCTCTTCATTCGAAGGC 686 consensus_9511#3 GATAGATACATAA-ATTTGCTCAGGAACAATTACCACTGCTCCGCTCTTCATTCGAAGGT 439 consensus_9511#2 GATAGATACATAA-ATTTGCTCAGGAACAATTACCACTGCGCCGCTCTTCATTCGAAGGT 680 consensus_9511#4 ------------------------------------------------------------ consensus_9511#6 ------------------------------------------------------------ consensus_9511#1 CACAACTGAAATACCCAGATTTGGTAACAGATATCTGATCCTCAGTATGC-TTTGCATGC 683 consensus_9511#5 ------------------------------------------------------------ consensus_9511#0 GCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGA 746 consensus_9511#3 GCTTCATTGTCGTGTTGCATTCTTTTCGCTATCGCCATTGCCGTAGCCGTTTACTATGGA 499 consensus_9511#2 GCTTCATT---------------------------------------------------- 688 consensus_9511#4 ------------------------------------------------------------ consensus_9511#6 ------------------------------------------------------------ consensus_9511#1 ATGAAATAACCGT----TGCTCCTCTACCAATGGATTCATCCCAAATTTCCGAAATCCAA 739 consensus_9511#5 ------------------------------------------------------------ consensus_9511#0 GTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATT-AA 805 consensus_9511#3 GTTATTCACGTCGATGAGTCCGCTTCCGATGTAATAAAGGACACTGGATCGAAGATTCAA 559 consensus_9511#2 ------------------------------------------------------------ consensus_9511#4 ------------------------------------------------------------ consensus_9511#6 ------------------------------------------------------------ consensus_9511#1 CATACTTCTTGGTTGTGGTAAGTTTTTGAAATCACGAAAAATCAAATACACACGCCTAAT 799 consensus_9511#5 ------------------------------------------------------------ consensus_9511#0 GGATTCCATTAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTTTGCAAATGTT 865 consensus_9511#3 GGATTCCATAAAAGATGGCTTTAAAAAGTTAAGCGACAATTGAGCGTGTT-GCAACTGTT 618 consensus_9511#2 ------------------------------------------------------------ consensus_9511#4 ------------------------------------------------------------ consensus_9511#6 ------------------------------------------------------------ consensus_9511#1 AGCATTTCTGATTATTAATTTCAGTCTCATTTGTACGCCCCCCCC--------------- 844 consensus_9511#5 ------------------------------------------------------------ consensus_9511#0 ACAACACACAACATAGAAGATGCTACCTGAAAATGGAACACCACCTCACTACCAAAAACG 925 consensus_9511#3 ACAACACACAACATAGAAGTTGCTAC---------------------------------- 644 consensus_9511#2 ------------------------------------------------------------ consensus_9511#4 ------------------------------------------------------------ consensus_9511#6 ------------------------------------------------------------ consensus_9511#1 ------------------------------------------------------------ consensus_9511#5 ------------------------------------------------------------ consensus_9511#0 TGCCAGCTATTACGCATACAGATATTTGCTCCCATCT 962 consensus_9511#3 ------------------------------------- consensus_9511#2 ------------------------------------- consensus_9511#4 ------------------------------------- consensus_9511#6 ------------------------------------- consensus_9511#1 ------------------------------------- consensus_9511#5 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||