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Anopheles gambiae
cluster # 9552 cluster # 9552       Sequences # 18       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9552#0 length = 1612 sequences # 16  
 consensus_9552#1 length = 799 sequences # 1  
consensus_9552#2 length = 436 sequences # 1  
consensusID : consensus_9552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 1612
fasta sequence 
                              [CGAGCAGGACGACCATGACACCGGGGACCTGAGTAAAACTACGAACGCGACCAAGACAGCGCAGGAGAACAGTATTAGCCTGCTGCAGCAGCTGGCGGCCAACAAGTGTACGGAAATTGCGACCGCCGGCAATCATTCCAGCTAACTGACGCTGGCAACCGCCGGTGGTTTGGCTGCGATTCCGATTGACACGGCCAATGCCGCCACAGCACACCCATCCGTTATCGAATGCGATGACGGCGAGGAGGTGGACTAAGCAGGGAAAGCTGTCTGCACCCATACATTTCCAGAATAATGTTTTGC-CACTCGGCAACGGTCCTTTCTTATTGGCTATTTTTCTACACGATAATGTGGCGATGTTTGTAAAGAAAATCTGATTGGAAATATCCAACTGGAAATCTACTACTTGAGGCTGCTATGAGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGAGAACTTTTTTTTAAATGGCGACAAAAAGAGCTAACAGGCGATGATTACAAGCTAAATATTAAATCTACTAGCCAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGT-CGACAGGCGCGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTACACCCTACAGAAGAACACTAG-CCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGT-GTTA-GGGTTAAACACA-GATTGA-GCTACATCGCGATGAACGCAATTACCGTGCACCGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTTTATTGAGTAACATTCATCGAACCGCATTACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGCCATTCTAACCTATCGGTATAACT-GCGTGACGCAACATGTAGGCTCACAATCATCACTGGTTAGGGTGAAAGGGAATAGCGCAGGTCCATTTTATATAACGGATAGAAGCACAGGAGTTGTATGATCACATC-AATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAATGGTGTTAAG-TTCACGCAACTCTATACCTTAAATAATGTAGCTACATAAAAACTG--AAAAAAATCTTTAGATACTGTAAG-TCTACAACAAAAAATATGACTTTTTTTCTAAAGCAAATATTGAATGCACGGAATATTATTCGTAT]

[+] EMBL BX628583             [CGAGCAGGACGACCATGACACCGGGGACCTGAGTAAAACTACGAACGCGACCAAGACAGCGCAGGAGAACAGTATTAGCCTGCTGCAGCAGCTGGCGGCCAACAAGTGTACGGAAATTGCGACCGCCGGCAATCATTCCAGCTAACTGACGCTGGCAACCGCCGGTGGTTTGGCTGCGATTCCGATTGACACGGCCAATGCCGCCACAGCACACCCATCCGTTATCGAATGCGATGACGGCGAGGAGGTGGACTAAGCAGGGAAAGCTGTCTGCACCCATACATTTCCAGATTAATGTTTTGCACACTCGGCAACGGTCCTTTCTTATTGGCTATTTTTCTACACGATAATGTGGCGATGTTTGTAAAGAAAATCTGATTGGAAATATCCAACTGGAAATCTACTACTTGAGGCTGCTATGAGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGATGACTTTTTTTTAAATGGCGACAAAAAGAGCTAAAAGGCGATGATTACAAGCTAAATATTAAATCTACTAGCCAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCNAGAACAAGTACGATCAATAACTGATTTGCTGCTTGN TGACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CNS0979G             [          GACCATGACACCGGGGACCTGAGTAAAACTACGAACGCGACCAAGACAGCGCAGGAGAACAGTATTAGCCTGCTGCAGCAGCTGGCGGCCAACAAGTGTACGGAAATTGCGACCGCCGGCAATCATTCCAGCTAACTGACGCTGGCAACTGCCGGTGGTTTGGCTGCGATTCCGATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AGA280364            [                                                                                                                                                                                           GACACGGTCATTGCCGCCGCAGCACACCCATCCGTTATCGACTGCGATGACGGCGAGGAGGTGGACTAAGCAGGGAAAGCTGTCTGCACCCATACATTTCCAGAATAATGTTTTGCACACTCGGCAACGGTCCTTTCTTATTGGCTATTTTTCTACACGATAATGTGGCGATGTTTGTAAAGAAAATCTGATTGGAAATATCCAACTGTAAATCTACTACTTGAGGCTGCTATGAGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGAGAACTTTTTTTTAAGTGGCGACAAAAAGAGCTAACAGGCGATGATTACAAGCTAAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CNS09DU7             [                                                                                                                                                                                                                                                                                                AGAATAATGTTTTGC CACTCGGCTACGGTCCTTTCTTATTGGCTATTTTTCTACACGATAATGTGGCGATGTTTGTAAAGAAAATCTGATTGGAAATATCCAACTGGAAATCTACTACTTGAGGCTGCTATGAGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGAGAACTTTTTTTTAAATGGCGACAAAAAGAGCTAACAGGCGATGATTACAAGCTAAATATTAAATCTACTAGCCAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGTCCGACAGGCGCGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTACACCCTACAGAAGAACACTAG CCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGT GTTA GGGTTAAACACA GATTGA GCTACATCGCGATGAACGCAATTACCGTGCACCGAACTTGCGTTTTGAACTTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX606476             [                                                                                                                                                                                                                                                                                                                                                            AATGTGGCGATGTTTGTAAAGAAAATCTGATTGGAAATATCCAACTGGAAATCTACTACTTGAGGCTGCTATGAGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGAGAACTTTTTTTTAAATGGCGACAAAAAGAGCTAACAGGCGATGATTACAAGCTAAATATTAAATCTACTAGCCAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGT CGACAGGCGCGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTACACCCTACAGAAGAACACTAG CCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGCCACGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX614453             [                                                                                                                                                                                                                                                                                                                                                                                                  ATCCAACTGGAAATCTACTACTTGAGGCTGCTATGAGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGAGAACTTTTTTTTAAATGGCGACAAAAAGAGCTAACAGGCGATGATTACAAGCTAAATATTAAATCTACTAGCCAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGT CGACAGGCGCGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CNS093W2             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGAGAGATCAAGAACAAGTACGATCAATAACTGATTTGCTGCTTGT TGACAGGCACGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCTGTTT   AAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTACACCCTACAGAAGAACACTAGCCCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGTGGTTAGGGGTTAAACACACGATTGACGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX615313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGT CGACAGGCGCGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTACACCCTACAGAAGAACACTAG CCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGT GTTA GGGTTAAACACA GATTGA GCTACATCGCGATGAACGCAATTACCGTGCACCGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTTTATTGAGTAACATTCATCGAACCGCATTACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGCCATTCTAACCTATCGGTATAACT GCGTGACGCAACATGTAGGCTCACAATCATCACTGGTTAGGGTGAAAGGGAATAGCGCAGGTCCATTTTA                                                                                                                                                                                                                                                                                          ]
[-] EMBL CNS09DU8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTGTTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTACACCCTACAGAAGAACACTAG CCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGT GTTA GGGTTAAACACA GATTGA GCTACATCGCGATGAACGCAATTACCGTGCACCGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTTTATTGAGTAACATTCATCGAACCGCATTACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGCCATTCTAACCTATCGGTATAACTCGCGTGACGCAACATGTAGGCTCACAATCATCACTGGTTAGGGTGAAAGGGAATAGCGCAGGTCCATTTTATATAACGGATAGAAGCACAGGAGTTGTATGATCACATC AATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAATGGTGTTAAG TTCACGCAACTCTATACCTTAAATAATGTAGCTACATAAAAACTG  AAAAAAATCTTTAGATACTGTAAG TCTACAACTAAAAATATGACTTTTTTTCTA                                   ]
[+] EMBL BX612395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTACACCCTACAGAAGAACACTAG CCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGT GTTA GGGTTAAACACA GATTGA GCTACATCGCGATGAACGCAATTACCGTGCACCGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAAT CGCATTCCTCTGGTTTATTGAGTAACATTCATCGAACCGCATTACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGCCATTCTAACCTATCGGTATAACT GCGTGACGCAACATGTAGGCTCACAATCATCACTGGTTAGGGTGAAAGGGAATAGCGCAGGTCCATTTTATATAACGGATAGAAGCACAGGAGTTGTATGATCACATC AATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAATGGTGT                                                                                                                                              ]
[-] EMBL CNS0979H             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGT GTTA GGGTTAAACACA GATTGA GCTACATCGCGATGAACGCAATTACCGTGCACCGGACTTGCGTTTTGAACTTTGCACCGCCCCCTAAATGCGCATTCCTCTGGTTTATTGAGTAACATTCATCGAACCGCATAACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGCCATTCTAACCTATCGGTATAACT GCGTGACGCAACATGTAGGCTCACAATCATCACTGGTTAGGGTGAAAGGGAATAGCGCAGGTCCATTTTATATAACGGATAGATTCACAGGAGTTGTATGATCACATC AATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAATGGTGTTAAGTTTCACGCAACTCTATACCTTAAATAATGTAGCTACATAAAAACTG  AAAAAAATCTTTAGATACTGTAAGTTCTACAACAAAA                                                     ]
[+] EMBL CNS08JGI             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCCACATGCATGCAGACATGCAGACATCGT GTTA GGGTTAAACACA GATTGA GCTACATCGCGATGAACGCAATTACCGTGCACTGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTGTATTGACTAACATTCATCGAACCGCATTACTATTGAATGTGACGGGAGACACAATGCGTCAACAAAGGGCCATT                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX612059             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AACGCAATTACCGTGCACCGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTTTATTGAGTAACACTCATCGAACCGCATTACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGCCATTCTAACCTATCGGTATAACT GCGTGACGCAACATGTAGGCTCACAATCATCACTGGTTAGGGTGAAAGGGAATAGCGCAGGTCCATTTTATATAACGGATAGAAGCACAGGAGTTGTATGATCACATC AATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAATGGTGTTAAGTTTCACGCAACTCTATACCTTAAATAATGTAGCTACATAAAAACTG  AAAAAAATCTTTAGATAC                                                                        ]
[+] EMBL BM580199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccgCGCAATTACCATGCACCGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTGTATTGACTAACATTCATCGAACCGCATTACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGTCATTCTAACCTATCGGTATAACT GCATGACACAGCATGTAGGGTCATAATCATCACTGGTTAGGGTGAAAGTGAATAGCGCAGGTCCATTTTGTATAACGGATAGAAGCACAGGAGTTGTATGATCACATC AATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTGATGGTGTTAAGTTTCACGCAACTCTATACCTTAAATAATGTAGCTACATAAAAACTG  AAAAAAATCTTTAGATACTGTAAGTTCTACTAC AAAAATATGAC TTTTTTCTAAAGCAAATATTGAATGCACGGAATATTATTCGTAT]
[-] EMBL CNS093W3             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATTACCGTGCACTGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTGTATTGACTAACATTCATCGAACCGCATTACTATTGAATGTGACGGGAGACACAATGCGTCAACAAAGGGCCATTCTAACCTATCGGTATAACT GCGTGACGCAACATGTAGGCTCACAATCATAACTGGTTAGAGTGAAAGGGAATAGCGCAGGTCCATTTTGTATAACGGATAGAAGCACAGGAGTTGTATGATCACATCAAATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAATGGTGTTAAT TTCACGCAACTCTATACCTTAAATATTGTAACTACATAAAAACTGAAAAAAAAAACTTTAGATACTATAAG Tt                                                               ]
[-] EMBL CNS08JGJ             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCGTGACGCAACATGTAGGCTCACAATCATTACTGGTTAGAGTGAAAGGGAATAGCGCGGGTCCATTTTGTATAACGGATAGAAGCACAGGAGTTGTATGATCACATC AATCCATTACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAATGGTGTTAAT TTCACGCAACTCTATACCTTAAATATTGTAac                                                                                                         ]




>consensus_9552#0
CGAGCAGGACGACCATGACACCGGGGACCTGAGTAAAACTACGAACGCGACCAAGACAGC
GCAGGAGAACAGTATTAGCCTGCTGCAGCAGCTGGCGGCCAACAAGTGTACGGAAATTGC
GACCGCCGGCAATCATTCCAGCTAACTGACGCTGGCAACCGCCGGTGGTTTGGCTGCGAT
TCCGATTGACACGGCCAATGCCGCCACAGCACACCCATCCGTTATCGAATGCGATGACGG
CGAGGAGGTGGACTAAGCAGGGAAAGCTGTCTGCACCCATACATTTCCAGAATAATGTTT
TGCCACTCGGCAACGGTCCTTTCTTATTGGCTATTTTTCTACACGATAATGTGGCGATGT
TTGTAAAGAAAATCTGATTGGAAATATCCAACTGGAAATCTACTACTTGAGGCTGCTATG
AGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGAGAACTTTTTTTT
AAATGGCGACAAAAAGAGCTAACAGGCGATGATTACAAGCTAAATATTAAATCTACTAGC
CAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGT
CCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGAT
AGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGTCGACAGGCGCGAACATTC
ATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTTGGTTTGTT
CCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAA
AGGTGATTCAATTTGCCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCC
AAGATGCAATGCAATGTGTCATGATTTCGCAAGTTGTGAGCCATTCGTTTGCCGCTTTAC
ACCCTACAGAAGAACACTAGCCGGTAGATTAGTCTTTCGATGCACGATGCGATTATTTGC
CACGATTGATGTTTTGCCACATGCATGCAGACATGCAGACATCGTGTTAGGGTTAAACAC
AGATTGAGCTACATCGCGATGAACGCAATTACCGTGCACCGAACTTGCGTTTTGAACTTT
GCACAGCCCCCTAAATGCGCATTCCTCTGGTTTATTGAGTAACATTCATCGAACCGCATT
ACTGTCGAATGTGACGGGAGACACAATGCGTCAGCATAGGGCCATTCTAACCTATCGGTA
TAACTGCGTGACGCAACATGTAGGCTCACAATCATCACTGGTTAGGGTGAAAGGGAATAG
CGCAGGTCCATTTTATATAACGGATAGAAGCACAGGAGTTGTATGATCACATCAATCCAT
TACACTATGACAGATGCGTATAGACTGGGTATTGTTTCAGACAAAAAGTGGCACTATTGA
ACAGAAGGCATGGTCTGTCCACAATTAATGGTGTTAAGTTCACGCAACTCTATACCTTAA
ATAATGTAGCTACATAAAAACTGAAAAAAATCTTTAGATACTGTAAGTCTACAACAAAAA
ATATGACTTTTTTTCTAAAGCAAATATTGAATGCACGGAATATTATTCGTAT

consensusID : consensus_9552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence 
                              [CCCTCAGCAGATCGGCCCAGGCAGCNTAGAGAGATCAAGAACAAGTACGATCAATAACTGATTTGCTGCTTGTTGACAGGCACGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTCGGGTCTTGTTCCGTAATGTCAAACGATCGTGGCATGCAACATTTCTTACAGAATCTGTCCTTAACCGGGTAGTCACANTGTAACACGGTGATTTCAACTTTGGCTACCTTTGNCCTTCGGGCACCAATTCCTGTTTCACACAGCATGAACCCAAGATGCAATGCACACTGTGTCCTGATTTCGCAAAGTTGTGAGCCATNTCGCTATATGCGACGCTTTTAACACACGCGTACAAGAAGCAACACTAGGCCCGGGTAGATTTAGTCTNTTACGAATGGNCACCGGAATGGCCGCATCTAATTTTTAGGGCCAACGAATCTCGGACTCGTTATATCATTGCNCCACACATGGCCANTTGTCACGGAACCACATTGGCTCANGGACAATCANGTGGTTCTCACACGCGCGGTTACAAAACCAAACCAAGGAACTTCGGAAGGCGTAACCAATACCGCCCGCAATTGGAAACAACATGCCCACAAGTTTAAACCCGGTNGGNCAACCTTGGGGAAACCNTTTTCGGNCCGCGTTCTCATCAGGAACACCCCTCNTTTTGGCACAACAAAAGGTGACCCCCCCCTTAAAAAAATTGNCGCGCACAATTTATTCCCCATTCCCTGAGGTGGGTGTACATACTGGANGCATTCAGAACAGTGTCC]

[+] EMBL AL696675             [CCCTCAGCAGATCGGCCCAGGCAGCNTAGAGAGATCAAGAACAAGTACGATCAATAACTGATTTGCTGCTTGTTGACAGGCACGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTCGGGTCTTGTTCCGTAATGTCAAACGATCGTGGCATGCAACATTTCTTACAGAATCTGTCCTTAACCGGGTAGTCACANTGTAACACGGTGATTTCAACTTTGGCTACCTTTGNCCTTCGGGCACCAATTCCTGTTTCACACAGCATGAACCCAAGATGCAATGCACACTGTGTCCTGATTTCGCAAAGTTGTGAGCCATNTCGCTATATGCGACGCTTTTAACACACGCGTACAAGAAGCAACACTAGGCCCGGGTAGATTTAGTCTNTTACGAATGGNCACCGGAATGGCCGCATCTAATTTTTAGGGCCAACGAATCTCGGACTCGTTATATCATTGCNCCACACATGGCCANTTGTCACGGAACCACATTGGCTCANGGACAATCANGTGGTTCTCACACGCGCGGTTACAAAACCAAACCAAGGAACTTCGGAAGGCGTAACCAATACCGCCCGCAATTGGAAACAACATGCCCACAAGTTTAAACCCGGTNGGNCAACCTTGGGGAAACCNTTTTCGGNCCGCGTTCTCATCAGGAACACCCCTCNTTTTGGCACAACAAAAGGTGACCCCCCCCTTAAAAAAATTGNCGCGCACAATTTATTCCCCATTCCCTGAGGTGGGTGTACATACTGGANGCATTCAGAACAGTGTCC]




>consensus_9552#1
CCCTCAGCAGATCGGCCCAGGCAGCNTAGAGAGATCAAGAACAAGTACGATCAATAACTG
ATTTGCTGCTTGTTGACAGGCACGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCG
TGTGCTATAACGTGCTTGTCGGGTCTTGTTCCGTAATGTCAAACGATCGTGGCATGCAAC
ATTTCTTACAGAATCTGTCCTTAACCGGGTAGTCACANTGTAACACGGTGATTTCAACTT
TGGCTACCTTTGNCCTTCGGGCACCAATTCCTGTTTCACACAGCATGAACCCAAGATGCA
ATGCACACTGTGTCCTGATTTCGCAAAGTTGTGAGCCATNTCGCTATATGCGACGCTTTT
AACACACGCGTACAAGAAGCAACACTAGGCCCGGGTAGATTTAGTCTNTTACGAATGGNC
ACCGGAATGGCCGCATCTAATTTTTAGGGCCAACGAATCTCGGACTCGTTATATCATTGC
NCCACACATGGCCANTTGTCACGGAACCACATTGGCTCANGGACAATCANGTGGTTCTCA
CACGCGCGGTTACAAAACCAAACCAAGGAACTTCGGAAGGCGTAACCAATACCGCCCGCA
ATTGGAAACAACATGCCCACAAGTTTAAACCCGGTNGGNCAACCTTGGGGAAACCNTTTT
CGGNCCGCGTTCTCATCAGGAACACCCCTCNTTTTGGCACAACAAAAGGTGACCCCCCCC
TTAAAAAAATTGNCGCGCACAATTTATTCCCCATTCCCTGAGGTGGGTGTACATACTGGA
NGCATTCAGAACAGTGTCC

consensusID : consensus_9552#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence 
                              [GATCGCCGAGGTTCTACAGGCGATGATTACAGCTAAATATTAATCTACTACCAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGTCGACAGGCGCGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTT]

[+] EMBL AL930050             [GATCGCCGAGGTTCTACAGGCGATGATTACAGCTAAATATTAATCTACTACCAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGTCGACAGGCGCGAACATTCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTGGTTTGTTCCGTAATGTAAACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCAATTTGCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATGCAATGTGTCATGATTT]




>consensus_9552#2
GATCGCCGAGGTTCTACAGGCGATGATTACAGCTAAATATTAATCTACTACCAGTAAGTG
ATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGTCCTGTCAGC
GGAATGGAAAGTCGGACGGACGCCCATACTAAATAGCTTATAAGCAAGGATAGATCAAGA
ATAAGTACGATCAATAACTGATTTGCTGCTTGTCGACAGGCGCGAACATTCATGTTGTCA
TGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTGGTTTGTTCCGTAATGTA
AACGATCGTGGATGAAATTTTAAGAATCTGTCCTAACGGTAGTAATGTAAAGGTGATTCA
ATTTGCTACCTTGCCTTCGCACCAATCCCGTTTAAAAAAAGATGAACCCAAGATGCAATG
CAATGTGTCATGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9552#0      CGAGCAGGACGACCATGACACCGGGGACCTGAGTAAAACTACGAACGCGACCAAGACAGC 60
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      GCAGGAGAACAGTATTAGCCTGCTGCAGCAGCTGGCGGCCAACAAGTGTACGGAAATTGC 120
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      GACCGCCGGCAATCATTCCAGCTAACTGACGCTGGCAACCGCCGGTGGTTTGGCTGCGAT 180
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      TCCGATTGACACGGCCAATGCCGCCACAGCACACCCATCCGTTATCGAATGCGATGACGG 240
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      CGAGGAGGTGGACTAAGCAGGGAAAGCTGTCTGCACCCATACATTTCCAGAATAATGTTT 300
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      TGCCACTCGGCAACGGTCCTTTCTTATTGGCTATTTTTCTACACGATAATGTGGCGATGT 360
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      TTGTAAAGAAAATCTGATTGGAAATATCCAACTGGAAATCTACTACTTGAGGCTGCTATG 420
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      AGCCCACGCTAGACGAAAAGGTGACGTAAGAGGCAAAGTAAGTGATGAGAACTTTTTTTT 480
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      AAATGGCGACAAAAAGAGCTAACAGGCGATGATTACAAGCTAAATATTAAATCTACTAGC 540
consensus_9552#2      ------GATCGCCGAGGTTCTACAGGCGATGATTACA-GCTAAATATTAA-TCTACTA-C 51
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      CAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGT 600
consensus_9552#2      CAGTAAGTGATTGTCGTTGAAATTTTGCTCCTCAATGGCATACTTTCCAAATGGCGCAGT 111
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      CCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAAT-AGCTTATA-AGCAAGG 658
consensus_9552#2      CCTGTCAGCGGAATGGAAAGTCGGACGGACGCCCATACTAAAT-AGCTTATA-AGCAAGG 169
consensus_9552#1      -------------------------------CCCTCAGCAGATCGGCCCAGGCAGCNTAG 29
                                                     ***  *  * **  **  *   ***   *

consensus_9552#0      ATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGTCGACAGGCGCGAACAT 718
consensus_9552#2      ATAGATCAAGAATAAGTACGATCAATAACTGATTTGCTGCTTGTCGACAGGCGCGAACAT 229
consensus_9552#1      AGAGATCAAGAACAAGTACGATCAATAACTGATTTGCTGCTTGTTGACAGGCACGAACAT 89
                      * ********** ******************************* ******* *******

consensus_9552#0      TCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTTTGGTTTG 778
consensus_9552#2      TCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTTTT-GGTTTG 288
consensus_9552#1      TCATGTTGTCATGGTTTTCGCGTCTGCTTCGTGTGCTATAACGTGCTTGTCGG-GTCTTG 148
                      **************************************************    *  ***

consensus_9552#0      TTCCGTAATGT-AAACGATCGTGG-ATGAAA----TTTTA-AGAATCTGTCCT-AAC--G 828
consensus_9552#2      TTCCGTAATGT-AAACGATCGTGG-ATGAAA----TTTTA-AGAATCTGTCCT-AAC--G 338
consensus_9552#1      TTCCGTAATGTCAAACGATCGTGGCATGCAACATTTCTTACAGAATCTGTCCTTAACCGG 208
                      *********** ************ *** **    * *** ************ ***  *

consensus_9552#0      GTAGT---AATGTAAA--GGTGATTCAA--TTTGCCTACCTT--GCCTTCG--CACCAAT 877
consensus_9552#2      GTAGT---AATGTAAA--GGTGATTCAA--TTTGC-TACCTT--GCCTTCG--CACCAAT 386
consensus_9552#1      GTAGTCACANTGTAACACGGTGATTTCAACTTTGGCTACCTTTGNCCTTCGGGCACCAAT 268
                      *****   * *****   *******  *  ****  ******   ******  *******

consensus_9552#0      CCC-GTTTAAAAAAAGATGAACCCAAGATGCAATGCAA--TGTGTCATGATTTCGCAA-G 933
consensus_9552#2      CCC-GTTTAAAAAAAGATGAACCCAAGATGCAATGCAA--TGTGTCATGATTT------- 436
consensus_9552#1      TCCTGTTTCACACAGCATGAACCCAAGATGCAATGCACACTGTGTCCTGATTTCGCAAAG 328
                       ** **** * * *  *********************   ****** ******       

consensus_9552#0      TTGTGAGCCATT-CGTTTGCCGCTTTACACCCTACAGAAGAACACTAGCCGGTAGATTAG 992
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      TTGTGAGCCATNTCGCTATATGCGACGCTTTTAACACACGCGTACAAGAAGCAACACTAG 388
                                                                                  

consensus_9552#0      TCTTTCGATGCACGATGCGATTATTTGCCACGATTGATGTTTTGCCACATGCATGCAGAC 1052
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      GCCCGGGTAGATTTAGTCTNTTACGAATGGNCACCGGAATGGCCGCATCTAATTTTTAGG 448
                                                                                  

consensus_9552#0      ATGCAGACATCGTGTTAGGGTTAAACACAGATTGAGCTACATCGCGATGAACGCAATTAC 1112
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      GCCAACGAATCTCGGACTCGTTATATC---ATTGCNCCACA-CATGGC-----CANTTGT 499
                                                                                  

consensus_9552#0      CGTGCACCGAACTTGCGTTTTGAACTTTGCACAGCCCCCTAAATGCGCATTCCTCTGGTT 1172
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      CACGGAACCACATTGGCTCANGGACAATCANGTGGTTCTCACACGCGCGGTTACAAAACC 559
                                                                                  

consensus_9552#0      TATTGAGTAACATTCATCGAACCGCATTACTGTCGAATGTGACGGGAGACACAATGC--G 1230
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      AAACCAAGGAACTTCGGAAGGCGTAACCAATACCGCCCGCAATTGGAAACAACATGCCCA 619
                                                                                  

consensus_9552#0      TCAGCATAGGGCCATTCTAACCTATCGGTATAACTGCGTGACGCAACATGTAGGC-TCAC 1289
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      CAAGTTTAAACCCGGTNGGNCAACCTTGGGGAAACCNTTTTCGGNCCGCGTTCTCATCAG 679
                                                                                  

consensus_9552#0      AATCATCACTGGTTAGGGTGAAAGGGAATAGCGCAGGTCCATTTTATATAACGGATAGAA 1349
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      GAACACCCCTCNTTTTGGCACAACAAAA-GGTGACCCCCCCCTTAAAAAAATTGNCGC-- 736
                                                                                  

consensus_9552#0      GCACAGGAGTTGTATGATCACATCAATCCATTACACTATGACAGATGCGTATAGACTGGG 1409
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      GCACAATTTATTCCCCATTCCCTGAGGTGGGTGTAC-ATACTGGANGCATTCAGAACAGT 795
                                                                                  

consensus_9552#0      TATTGTTTCAGACAAAAAGTGGCACTATTGAACAGAAGGCATGGTCTGTCCACAATTAAT 1469
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      GTCC-------------------------------------------------------- 799
                                                                                  

consensus_9552#0      GGTGTTAAGTTCACGCAACTCTATACCTTAAATAATGTAGCTACATAAAAACTGAAAAAA 1529
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      ATCTTTAGATACTGTAAGTCTACAACAAAAAATATGACTTTTTTTCTAAAGCAAATATTG 1589
consensus_9552#2      ------------------------------------------------------------
consensus_9552#1      ------------------------------------------------------------
                                                                                  

consensus_9552#0      AATGCACGGAATATTATTCGTAT 1612
consensus_9552#2      -----------------------
consensus_9552#1      -----------------------


Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)