cluster # 956

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Anopheles gambiae
cluster # 956 cluster # 956 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_956#0 length = 593 sequences # 1

consensus_956#1 length = 331 sequences # 1

consensusID : consensus_956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TGTGTTTTTTAGTCCATCTTGACATTGAACTGTCTGTTCTTGGGTATTTAGAAATAAACACGTATAATCCATGTTGGACATGTATCGGTGTCTACCAATGTGTCAAAAATTTATAAAATTTATAAAATCATCTTTTGTTCGGTGAGTCCAAGTGATATAAAAAATACCTCTTTACAATACAATTCAGTCTTCCTTTTTCCGCGTAGTTAAAGTACTTTATGAAAACGCACCTAACATGTATTGTTCTGCCATTTTATCAAGTACGTAAGAAACGAGTACTCTGTTAATTTTATAGATTTAATTGATGGTTCGTGTTCTAGGATACTATTAAACTGTATGTAATTAATTCACATTTCTAATTTTTTACCACTGTTCAATCTTATACCATCGGATTTAGGCTCACGGCGTGGTTCCCGCGGAAGCAGTAATGCATCGGCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAGGACAACGGTACAACACACCCGAACGAGAGTGTTACGGTTGAGATCGCGTAGATTAAAACGTAAATTGATAACAGATAACAGTAGAACAGAACAATGGGAAAACGATAAAGGAA]

[+] EMBL BX627245             [TGTGTTTTTTAGTCCATCTTGACATTGAACTGTCTGTTCTTGGGTATTTAGAAATAAACACGTATAATCCATGTTGGACATGTATCGGTGTCTACCAATGTGTCAAAAATTTATAAAATTTATAAAATCATCTTTTGTTCGGTGAGTCCAAGTGATATAAAAAATACCTCTTTACAATACAATTCAGTCTTCCTTTTTCCGCGTAGTTAAAGTACTTTATGAAAACGCACCTAACATGTATTGTTCTGCCATTTTATCAAGTACGTAAGAAACGAGTACTCTGTTAATTTTATAGATTTAATTGATGGTTCGTGTTCTAGGATACTATTAAACTGTATGTAATTAATTCACATTTCTAATTTTTTACCACTGTTCAATCTTATACCATCGGATTTAGGCTCACGGCGTGGTTCCCGCGGAAGCAGTAATGCATCGGCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAGGACAACGGTACAACACACCCGAACGAGAGTGTTACGGTTGAGATCGCGTAGATTAAAACGTAAATTGATAACAGATAACAGTAGAACAGAACAATGGGAAAACGATAAAGGAA]




>consensus_956#0
TGTGTTTTTTAGTCCATCTTGACATTGAACTGTCTGTTCTTGGGTATTTAGAAATAAACA
CGTATAATCCATGTTGGACATGTATCGGTGTCTACCAATGTGTCAAAAATTTATAAAATT
TATAAAATCATCTTTTGTTCGGTGAGTCCAAGTGATATAAAAAATACCTCTTTACAATAC
AATTCAGTCTTCCTTTTTCCGCGTAGTTAAAGTACTTTATGAAAACGCACCTAACATGTA
TTGTTCTGCCATTTTATCAAGTACGTAAGAAACGAGTACTCTGTTAATTTTATAGATTTA
ATTGATGGTTCGTGTTCTAGGATACTATTAAACTGTATGTAATTAATTCACATTTCTAAT
TTTTTACCACTGTTCAATCTTATACCATCGGATTTAGGCTCACGGCGTGGTTCCCGCGGA
AGCAGTAATGCATCGGCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAG
GACAACGGTACAACACACCCGAACGAGAGTGTTACGGTTGAGATCGCGTAGATTAAAACG
TAAATTGATAACAGATAACAGTAGAACAGAACAATGGGAAAACGATAAAGGAA

consensusID : consensus_956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [GATTGATGAATGTTTCGCTCTCTACGGGACAACAAACTCCTGCACGGCCAAGAACGACGCGGCTCACGCATGTCCGTACGTTTACCATCTCGTCAGCCTAGCATGGCATCACTGCGACCGCATTCACCGAATGCATCGATAGGCTCACGGCGTGGTTCCCGCGGAAGCAGTAATGCATCGGCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAGGACAACGGTACAACACACCCGAACGAGAGTGTTACGGTTGAGATCGCGGAGATTAAAACGTAAATTGATAACAGATAACAGTAAAACAGAACAATGGGAAAACGAT]

[+] EMBL AGA282169            [GATTGATGAATGTTTCGCTCTCTACGGGACAACAAACTCCTGCACGGCCAAGAACGACGCGGCTCACGCATGTCCGTACGTTTACCATCTCGTCAGCCTAGCATGGCATCACTGCGACCGCATTCACCGAATGCATCGATAGGCTCACGGCGTGGTTCCCGCGGAAGCAGTAATGCATCGGCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAGGACAACGGTACAACACACCCGAACGAGAGTGTTACGGTTGAGATCGCGGAGATTAAAACGTAAATTGATAACAGATAACAGTAAAACAGAACAATGGGAAAACGAT]




>consensus_956#1
GATTGATGAATGTTTCGCTCTCTACGGGACAACAAACTCCTGCACGGCCAAGAACGACGC
GGCTCACGCATGTCCGTACGTTTACCATCTCGTCAGCCTAGCATGGCATCACTGCGACCG
CATTCACCGAATGCATCGATAGGCTCACGGCGTGGTTCCCGCGGAAGCAGTAATGCATCG
GCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAGGACAACGGTACAACA
CACCCGAACGAGAGTGTTACGGTTGAGATCGCGGAGATTAAAACGTAAATTGATAACAGA
TAACAGTAAAACAGAACAATGGGAAAACGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_956#0      TGTGTTTTTTAGTCCATCTTGACATTGAACTGTCTGTTCTTGGGTATTTAGAAATAAACA 60
consensus_956#1      ------------------------------------------------------------
                                                                                 

consensus_956#0      CGTATAATCCATGTTGGACATGTATCGGTGTCTACCAATGTGTCAAAAATTTATAAAATT 120
consensus_956#1      ------------------------------------------------------------
                                                                                 

consensus_956#0      TATAAAATCATCTTTTGTTCGGTGAGTCCAAGTGATATAAAAAATACCTCTTTACAATAC 180
consensus_956#1      ------------------------------------------------------------
                                                                                 

consensus_956#0      AATTCAGTCTTCCTTTTTCCGCGTAGTTAAAGTACTTTATGAAAACGCACCTAACATGTA 240
consensus_956#1      ------------------------------------------------------GATTGA 6
                                                                            **  *

consensus_956#0      TTGTTCTGCCATTTTATCAAGTACGTAAGAAACGAGTACTCTGTTAATTTTATAGATTTA 300
consensus_956#1      TGAATGTTTCGCTCTCTACGGGAC--AACAAACTCCTGCACGGCCAAG---AACGACGCG 61
                     *   * *  *  * * *   * **  ** ****   * * * *  **    *  **    

consensus_956#0      ATTGATGGTTCGTGTTCTAGGATACTATTAAACTGTATGTAATTAATTCACATTTCTAAT 360
consensus_956#1      GCTCACG---CATGTCC----GTACGTTTAC----CATCTCGTCAGCCTAGCATGGCA-- 108
                       * * *   * *** *     ***  ***      ** *  * *    *   *   *  

consensus_956#0      TTTTTACCACTGTTCAATCTTATACCATCGGATTTAGGCTCACGGCGTGGTTCCCGCGGA 420
consensus_956#1      TCACTGCGACCGCATTCACCGAATGCATCGA---TAGGCTCACGGCGTGGTTCCCGCGGA 165
                     *   * * ** *      *  *   *****    **************************

consensus_956#0      AGCAGTAATGCATCGGCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAG 480
consensus_956#1      AGCAGTAATGCATCGGCAACTTCCACCAAATCCAACCGTAGTGCAAACCATCACATAAAG 225
                     ************************************************************

consensus_956#0      GACAACGGTACAACACACCCGAACGAGAGTGTTACGGTTGAGATCGCGTAGATTAAAACG 540
consensus_956#1      GACAACGGTACAACACACCCGAACGAGAGTGTTACGGTTGAGATCGCGGAGATTAAAACG 285
                     ************************************************ ***********

consensus_956#0      TAAATTGATAACAGATAACAGTAGAACAGAACAATGGGAAAACGATAAAGGAA 593
consensus_956#1      TAAATTGATAACAGATAACAGTAAAACAGAACAATGGGAAAACGAT------- 331
                     *********************** **********************