|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1272 fasta sequence
[GCGGCCGAGTTATTTGTTTACCGCATCGCACATCGCAAGGAAAGAGAGTAAATTTGGCTTTTTCTTCATCCCAGCAGACACACCAACAAGCGAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC-GGATTTCAAATCAACTGGATGATACTGC-GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC-GACCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGCCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACAACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTG-GCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTCCACTATCTTGCCCAGTTTCATGGGACCATCATATTATTATTAGGTAGTTTAGGTACGGACACACCAGCCATGCCAGGGAAACGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGTACAACGGCTACCATTCGACGATCACATCTGCCTCACGCGAGCAGCTTAGCAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAAT-CTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTAAGTTCAGCTTCAAGGAAGCTGTGTCCCTTATTTTACAAAACGTTGAAATACATGTCACCAAAATGTACGTAAGGCGAAAAAAAAAAAA]
[+] EMBL CNS09ASW [GCGGCCGAGTTATTTGTTTACCGCATCGCACATCGCAAGGAAGGAGAGTAAATTTGGCTTTTTCTTCACCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC GGATTTCAAATCAACTGGATGATACTGC GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GACCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGTTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAAGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGGGGGGCACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTCGAATTCGCCATTGAGCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTGCACTAACTTGCCCAGTTTCATGGGACCATCATATTATTCTTAGATAGTTTAGGTACGGACACACCAGCCATGCCAGGGAAGCGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGC ]
[+] EMBL CNS097Z1 [ CGGCCGAGTTATTTGTTTACCGCATCGCACATCGCAAGGAAGGAGAGTAAATTTGGCTTTTTCTTCACCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC GGATTTCAAATCAACTGGATGATACTGC GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GACCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGTTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAAGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGGGGGGCACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTCGAATTCGCCATTGAGCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTGCACTAACTTGCCCAGTTTCATGGGACCATCATATTATTCTTAGATAGTTTAGGTACGGACACACCAGCCATGCCAGGGAAGCGCTTGGGCATTTCTGGCCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGA ]
[+] EMBL CNS08QG5 [ GCATCGCACATCGCAAGGAAAGAGAGTAAATTTGGCTTTTTCTTCATCCCAGCAGACACACCAACAAGCGAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC GGATTTCAAATCAACTGGATGATACTGC GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GACCAGAAGGTCCTCTTAAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGCCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACAACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTG GCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTCCACTATCTTGCCCAGTTTCATGGGACCATCATATTATTATTAGGTAGTTTAGGTACGGACACACCAGCCATGCCAGGGAAACGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACC AAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGTACAACGGCTACCATTCGACGATCACATCTGCCTCACGCGAGCAGCTTAGCAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATC ]
[+] EMBL CNS08RHO [ ATCGCACATCGCAA GAAAGAGAGT AATTTGGCTTTTTCTTCATCCCAGCAGACACACCAACAAGCGAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC GGATTTCAAATCAACTGGATGATACTGC GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCAGACCAGAAGGTCCatc ]
[+] EMBL CNS08T6C [ ATCGC CCTCGCAAGGAAAGAGAGTAAATTTGGCTTTTTCTTCATCCCAGCAGACACACCAACAAGCGAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC GGATTTCAAATCAACTGGATGATACTGC GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GACCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTACGGTTATACTACATCTAAGCCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACAACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTG GCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTCCACTATCTTGCCCAGTTTCATGGGACCATCATATTATTATTAGGTAGTTTAGGTACGGACACACCAGCCATGCCAGGGAAACGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGT ]
[+] EMBL BX602307 [ GCAAGGAAAGAGAGTAAATTTGGCTTTTTCTTCATCCCAGCAGACACACCAACAAGCGAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC GGATTTCAAATCAACTGGATGATACTGC GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GACCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAAC TCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGCCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACAACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTG GCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACCCCGATTTGTT ]
[+] EMBL BX628642 [ gGAGAGTAAATTTGGCTTTTTCTTCACCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAAC GGATTTCAAATCAACTGGATGATACTGC GGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GATCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGTAGGGAACACGGTCGGGACTGC ]
[+] EMBL CNS08LQQ [ TTTGGCTTTTTCTTCATCCCAGCAGACACACCAACAAGCGAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAACGGGATTTCAAATCAACTGGATGATACTGCGGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GACCAGAAGGTCCTCTTCAAGGGGCGCATAAAAAAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGCCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACAACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATac ]
[-] EMBL CNS08QG6 [ GAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTC GACCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGCCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACAACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTG GCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGAACACACGCCGATTTGTTTTTCCACTATCTTGCCCAGTTTCATGGGACCATCATATTATTATTAGGTAGTTTAGGTACGGACACACCAGCCATGCCAGGGAAACGCTTGGGCATTTCTGGTCGGGTGAATATGAAACC AAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGTACAACGGCTACCATTCGACGATCACATCTGCCTCACGCGAGCAGCTTAGCAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAAT CTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTAAGTTCAGCCTCAAGGAAGCTGTGTCCCTTATTTTACAAAACGTTGAAATACATGTCACCAtat ]
[-] EMBL CNS08T6D [ ACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTACGGTTATACTACATCTAAGCCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACAACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTG GCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGGACACACGCCGATTTGTTTTTCCACTATCTTGCCCAGTTTCATGGGACCATCATATTATTATTAGGTAGTTTAGGTACGGACACACCAGCCATGCCAGGGAAACGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGTACAACGGCTACCATTCGACGATCACATCTCCCTCACGCGAGCAGCTTAGCAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAAT CTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTAAGTTCAGCTTCAAGGAAGCTGTGTCCCTTATTTTACAAAACGTTGAAATACATGTCACCGAAATGTACGTAAGGCGAAAAAA ]
[-] EMBL CNS08RHP [ TAGTTTAGGTACGGATACACCAGCCATGCCAGGGAAACGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGTACAACGGCTACCATTCGACGATCACATCTGCCTCACGCGAGCAGCTTAGCAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAATACTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTAAGTTCAGCTTCAAGGAAGCTGTGTCCCTTATTTTACAAAACGTTGAAATACATtc ]
[-] EMBL CNS08LQR [ CAAAATGGGTTTTTTTCCATTCACACTCTAATCAAAAACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAAT CTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTAAGTTCAGCTTCAAGGAAGCTGTGTCCCTTTTTTTACAAAACGTTGAAATACATGTCACC AAATGTACGTAAAACAAAAAAAAAAAAA]
consensusID : consensus_9601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1221 fasta sequence
[TCTTCACCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAACGGATTTCAAATGTAAGTGATGCAGCAACTACAGAGGAGTGATTGGTGTGTTTCCCTGTACGATTTGAGTCGTCTTTCGTCACTGTTTGCAGCAACTGGATGATACTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGATCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGTTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAAGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGGGGGGCACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTCGAATTCGCCATTGAGCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTGCACTAACTTGCCCAGTTTCATGGGACCATCATATTATTCTTAGATAGTTTAGGTACGGACACACCAGCCAT-GCCAGGGAAGCGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGCAGCTTAACAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAATCTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTATGTTCAGCTTCCAGGAAGCTGTGTCCCTTATTTTACAAAACGTTGAAATACAT-TCACCAA]
[+] EMBL BX625994 [TCTTCACCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAACGGATTTCAAATGTAAGTGATGCAGCAACTACAGAGGAGTGATTGGTGTGTTTCCCTGTACGATTTGAGTCGTCTTTCGTCACTGTTTGCAGCAACTGGATGATACTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGATCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAAAATTCGCCATTG GCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTGCACTAACTTGNCCAGTTTCATGGGACCATCATATTATTCTTANATAGTTTAGGTACNGACACACCAGCCATGGCCAGGGAAGCGCTTGGG ]
[+] EMBL BM578055 [ ccgTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGATCAGAAGGTCCTCTTCAAGGGGC ]
[-] EMBL CNS09ASX [ CGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGTTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAAGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGGGGGGCACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTCGAATTCGCCATTGAGCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTTTTTGCACTAACTTGCCCAGTTTCATGGGACCATCATATTATTCTTAGATAGTTTAGGTACGGACACACCAGCCAT GCCAGGGAAGCGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGCAGCTTAACAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAATCTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTATGTTCAGCTTCCAGGAAGCTGTGTCCCTTATTTTACAAAACGTTGAAATACAT TCACCAA]
[-] EMBL CNS097Z2 [ tGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGTTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAAGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGGGGGGCACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTCGAATTCGCCATTGAGCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGAACACACGCCGATTTGTTTTTGCACTAACTTGCCCAGTTTCATGGGACCATCATATTATTCTTAGATAGTTTAGGTACGGACACACCAGCCAT GCCAGGGAAGCGCTTGGGCATTTCTGGCCGGGTGAATCTGAAACCAAAAAAAAAAAACACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAAAAGGATGCAAAGGACACACAGACACATTGTACTTAAGCGACAGCAGCTTAACAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACAGTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAAGTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAATCTTTTTTATACGAACGTGAGAGGCGCTGAACTGTGTATCTGCCTATGTTCAGCTTCCAGGAAGCTGTGTCCCTTATTTTACAAAACGTTGAAATACATGTCAC ]
consensusID : consensus_9601#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[AGGCAGAATCCGGCACNAGGCCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAACGGATTTCAAATCAACTGGATGATACTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGTCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGATCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTGCAAAACGNAGCCCGAACGTAGGGGAAACACGGGTCGGGGACTGGTAGGTTCAAATCATTTANCCAACCGAAAGCTCCTTAGAATTTCCGCCATTGGGCCNTTCGCTTGCTGAATGTTGGTANCGGGCACTAAAGGGACACAAGC]
[+] EMBL BX468279 [AGGCAGAATCCGGCACNAGGCCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAAGGGGAGAAAATTCTAAACGGATTTCAAATCAACTGGATGATACTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCCCGGACGTCGAGCACGAGGCGAAGGTGTCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGCGGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGATCAGAAGGTCCTCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACACGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCAAAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTGCAAAACGNAGCCCGAACGTAGGGGAAACACGGGTCGGGGACTGGTAGGTTCAAATCATTTANCCAACCGAAAGCTCCTTAGAATTTCCGCCATTGGGCCNTTCGCTTGCTGAATGTTGGTANCGGGCACTAAAGGGACACAAGC]
consensusID : consensus_9601#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[GCCCGAGGTTTACGTGACATCGAGACGAGCTTTACGATNGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTGGCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTATTATGCACTTAACTTGGCCCCCAANGGTTATTTTACCATTGGGGGGAACCCCAATTTCCAAATTAATTTCTTCCAACTTTTCCCTTTTAAGGAAATTTAAGGTTATACNTAGGGTAACAGGGAAACACGAACCCAGGCCCATGCCCAGGGGAAGCGGCTTGGGGCATTTCCTAGGTCCGGGTTGAAATCTTGAAAGAACCCAACATACACAACAGNACAGAAGACACAACCCTCAAGCGACTCTCATTGCTTGCCACAAGCAACGCGCCCAANGCACACATGATGCAAACAGGGACACACAGACCACAGTTGGTACTTACA]
[+] EMBL AL693741 [GCCCGAGGTTTACGTGACATCGAGACGAGCTTTACGATNGGCGACACGCTCATCAGCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGGCGGGCCGGGGTGGGATGATGCCCGCGCGTGTTCAAACGACCGAACGTAGGGAACACGGTCGGGACTGCTAGTTCAAATCATTTTTCAACGAACTCCTTAGAATTCGCCATTGGCCATTCGCTTGCTGATGTGGTACGGCACTAAAGGCACACACGCCGATTTGTATTATGCACTTAACTTGGCCCCCAANGGTTATTTTACCATTGGGGGGAACCCCAATTTCCAAATTAATTTCTTCCAACTTTTCCCTTTTAAGGAAATTTAAGGTTATACNTAGGGTAACAGGGAAACACGAACCCAGGCCCATGCCCAGGGGAAGCGGCTTGGGGCATTTCCTAGGTCCGGGTTGAAATCTTGAAAGAACCCAACATACACAACAGNACAGAAGACACAACCCTCAAGCGACTCTCATTGCTTGCCACAAGCAACGCGCCCAANGCACACATGATGCAAACAGGGACACACAGACCACAGTTGGTACTTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9601#1 ----------------------------------------------------------T- 1
consensus_9601#2 --------------------------------------------AGGCAGAATCCGGCA- 15
consensus_9601#0 GCGGCCGAGTTATTTGTTTACCGCATCGCACATCGCAAGGAAAGAGAGTAAATTTGGCTT 60
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 ---CTTCACCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAA 58
consensus_9601#2 ---CNAGGCCCCAGCAGACACACCAACAAGCTAGCAATGGGCACGGACGATCTCGGTAAA 72
consensus_9601#0 TTTCTTCATCCCAGCAGACACACCAACAAGCGAGCAATGGGCACGGACGATCTCGGTAAA 120
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 GGGGAGAAAATTCTAAACGGATTTCAAATGTAAGTGATGCAGCAACTACAGAGGAGTGAT 118
consensus_9601#2 GGGGAGAAAATTCTAAACGGATTTCAAAT------------------------------- 101
consensus_9601#0 GGGGAGAAAATTCTAAACGGATTTCAAAT------------------------------- 149
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 TGGTGTGTTTCCCTGTACGATTTGAGTCGTCTTTCGTCACTGTTTGCAGCAACTGGATGA 178
consensus_9601#2 -------------------------------------------------CAACTGGATGA 112
consensus_9601#0 -------------------------------------------------CAACTGGATGA 160
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 TACTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCC 238
consensus_9601#2 TACTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCC 172
consensus_9601#0 TACTGCGGGATGCGGACACGGGTAAGATCATCTGGCAGGAGAACAAGGACTTCTCCTGCC 220
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 CGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGC 298
consensus_9601#2 CGGACGTCGAGCACGAGGCGAAGGTGTCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGC 232
consensus_9601#0 CGGACGTCGAGCACGAGGCGAAGGTGCCGGTCAAGATACTCAGCTTGCGTGCCGTGTCGC 280
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 GGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGATCAGAAGGTCC 358
consensus_9601#2 GGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGATCAGAAGGTCC 292
consensus_9601#0 GGGAAATCAACTTCAGCACCGTCGAGGCGATGGAAAACTTTCGACTCGACCAGAAGGTCC 340
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 TCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACA 418
consensus_9601#2 TCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACA 352
consensus_9601#0 TCTTCAAGGGGCGCATTATGGAGGAATGGTTTTTCGAGATGGGATGGGTCAGCCCGAACA 400
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 CGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCA 478
consensus_9601#2 CGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCA 412
consensus_9601#0 CGACCAACACCTGGCAGTCGACCATCGAGGCCGCGCCCGAGTCGCAGATGATGCCGGCCA 460
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 AAGTGCTGAACGGCAACGTGACCATCGAGACGAGTTTTTACGACGGCGACACGCTCATCA 538
consensus_9601#2 AAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCA 472
consensus_9601#0 AAGTGCTGAACGGCAACGTGACCATCGAGACGAGCTTTTACGACGGCGACACGCTCATCA 520
consensus_9601#3 ----GCCCGAGGTTTACGTGAC-ATCGAGACGAGCTTTACGATNGGCGACACGCTCATCA 55
** * * ******* *********** *** ****************
consensus_9601#1 GCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAAGGGG-CGGGCCGGGGTGGGATGA 597
consensus_9601#2 GCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGGGCGGGCCGGGGTGGGATGA 532
consensus_9601#0 GCAAGTCGGTGGTGCGGTTATACTACATCTAAGCCAGGGGG-CGGGCCGGGGTGGGATGA 579
consensus_9601#3 GCAAGTCGGTGGTGCGGTTATACTACATCTAAGGCAGGGGG-CGGGCCGGGGTGGGATGA 114
********************************* ** **** ******************
consensus_9601#1 TGCCCGCGCGTGTTCAAA-CGA---CCGAACG--GGGGGCACACGGTC--GGGACTGCTA 649
consensus_9601#2 TGCCCGCGCGTGTGCAAAACGNAGCCCGAACGTAGGGGAAACACGGGTCGGGGACTGGTA 592
consensus_9601#0 TGCCCGCGCGTGTTCAAA-CAA---CCGAACGT--AGGGAACACGGTC--GGGACTGCTA 631
consensus_9601#3 TGCCCGCGCGTGTTCAAA-CGA---CCGAACGT--AGGGAACACGGTC--GGGACTGCTA 166
************* **** * ******* ** ****** ******* **
consensus_9601#1 G-TTCAAATCATTT-TTCAAC---GAACTCCTTCGAATT--CGCCATTGAGCCATTCGCT 702
consensus_9601#2 GGTTCAAATCATTTANCCAACCGAAAGCTCCTTAGAATTTCCGCCATTGGGCCNTTCGCT 652
consensus_9601#0 G-TTCAAATCATTT-TTCAAC---GAACTCCTTAGAATT--CGCCATTG-GCCATTCGCT 683
consensus_9601#3 G-TTCAAATCATTT-TTCAAC---GAACTCCTTAGAATT--CGCCATTG-GCCATTCGCT 218
* ************ **** * ****** ***** ******** *** ******
consensus_9601#1 TGCTGA-TGT-GGTAC--GGCACTAAAGGCACACACGCCGATTTGTTTTTGCACTAACTT 758
consensus_9601#2 TGCTGAATGTTGGTANCGGGCACTAAAGGGACACAAGC---------------------- 690
consensus_9601#0 TGCTGA-TGT-GGTAC--GGCACTAAAGGCACACACGCCGATTTGTTTTTCCACTATCTT 739
consensus_9601#3 TGCTGA-TGT-GGTAC--GGCACTAAAGGCACACACGCCGATTTGTATTATG--CACTTA 272
****** *** **** *********** ***** **
consensus_9601#1 GCCCAGTTTCATGGGACCATCATATTATTCTTAGATAGTTTAGGTACGGACACACCAGCC 818
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 GCCCAGTTTCATGGGACCATCATATTATTATTAGGTAGTTTAGGTACGGACACACCAGCC 799
consensus_9601#3 ACTTGGCCCCCAANGGTTATTTTACCATTGGGGGGAACCCCAATTTCCAAATTAATTTCT 332
consensus_9601#1 ATGCCAGGGAAGCGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAAC 878
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 ATGCCAGGGAAACGCTTGGGCATTTCTGGTCGGGTGAATCTGAAACCAAAAAAAAAAAAC 859
consensus_9601#3 TCCAACTTTTCCCTTTTAAGGAAATTTAAGGTTATACNTAGGGTAACAGGGAAACACGAA 392
consensus_9601#1 ACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAA---AAGGATGCAAAGGACACAC 935
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 ACCTCAACGCTCTCATTGCTGCACAAGCAACGGCAAAA---AAGGATGCAAAGGACACAC 916
consensus_9601#3 CCCAGGCCCATGCCCAGGGGAAGCGGCTTGGGGCATTTCCTAGGTCCGGGTTGAAATCTT 452
consensus_9601#1 AGACACATTGTACTTAAGCGACAG------------------------------------ 959
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 AGACACATTGTACTTAAGCGACAGTACAACGGCTACCATTCGACGATCACATCTGCCTCA 976
consensus_9601#3 GAAAGAACCCAACATACACAACAGNACAGAAGACACAACCC-----------TCAAGCGA 501
consensus_9601#1 ------CAGCTTAACAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACA 1013
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 CGCGAGCAGCTTAGCAAAATGGGTTTTTTTCGATTCACACTCTAATCAAACACTAAAACA 1036
consensus_9601#3 CTCTCATTGCTTGCCACAA-GCAACGCGCCCAANGCACACATGATGCAAACAGGGACACA 560
consensus_9601#1 GTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAA 1073
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 GTGCACGCATCAAGGGGCGCCCGACTATGCTAGCATGTAATGATGAATGTTATAATGTAA 1096
consensus_9601#3 CAGACCACAGTTGGTACTTACA-------------------------------------- 582
consensus_9601#1 GTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAATCTTTTTTATACGAACGT 1133
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 GTAATCACAGAATTAAGCACCATTTTTTAATGTATAAGTCAATCTTTTTTATACGAACGT 1156
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 GAGAGGCGCTGAACTGTGTATCTGCCTATGTTCAGCTTCCAGGAAGCTGTGTCCCTTATT 1193
consensus_9601#2 ------------------------------------------------------------
consensus_9601#0 GAGAGGCGCTGAACTGTGTATCTGCCTAAGTTCAGCTTCAAGGAAGCTGTGTCCCTTATT 1216
consensus_9601#3 ------------------------------------------------------------
consensus_9601#1 TTACAAAACGTTGAAATACAT-TCACCAA--------------------------- 1221
consensus_9601#2 --------------------------------------------------------
consensus_9601#0 TTACAAAACGTTGAAATACATGTCACCAAAATGTACGTAAGGCGAAAAAAAAAAAA 1272
consensus_9601#3 --------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||