Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 9631 cluster # 9631       Sequences # 19       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9631#0 length = 926 sequences # 16  
consensus_9631#1 length = 563 sequences # 2  
consensus_9631#2 length = 336 sequences # 1  

consensusID : consensus_9631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 926
fasta sequence
                              [CAGAATCCCCCGCCGAAGAACCTTCCCTCGCGT--ACCGGGTTCAAATTCAGCGCAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCC-TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA-GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAAGAAGCTGACGGCAATGTCAGCGCAGGACGAGGATCTGAAAAAGAAGATGGGTGTGTAGAAAGGGTGAGCTCGAAGGCAAAGGCACTGTTAGAGTTAAATCCGTACCCGCATGTTAGCCACCAC-GTGTGTTGATTCGTTTTTTTTTACTTTTTATTCATTCATTACTTACTCAATGGTAAGCAATATTGGTAGCAGCAGTTCAGGGAGGGTCGGGAACTGCGTATGTTAGTTTTCAGTTGATCATTCGATGCGCATTTCGT]

[+] EMBL AL934803             [CAGAATCCCCCGAGGTTTTAACTTCCCTCGCGT  ACCGGGTTCAAATTCAGCGCAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGG CCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCANCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCA                                                                                                                                                                                                                                                                      ]
[+] EMBL BM599239             [            CCGAAGAACCTTCCCTCGCGT  ACCGGGTTCAAATTCAGCACAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCAAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGTCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAA                                                                                                                                                                                                                                                                     ]
[+] EMBL BM576756             [            CCGAAGAACCTTCCCTCGCGT  ACCGGGTTCAAATTCAGCACAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCAAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGTCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAAGGGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAAG                                                                                                                                                                                                                                                                    ]
[+] EMBL BX607032             [                      TTCCCTCGCGT  ACCGGGTTCAAATTCAGCGCAGAAAGTGAAACTATTCCAACACGTTTGTTGATGTAGCGAACATTTCCTTTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM631403             [                      gaCCCACGCGTCCGCCGGGTTCAAATTCAGCGCAGAAAGTGAAACTATTCCAACACGTTTGTTGATGTAGCGAACATTTCCTTTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCAACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCAT                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX627144             [                        CCCTCGCGT  ACCGGGTTCAAATTCAGCGCAGAAAGTGAAACTATTCCAACACGTTTGTTGATGTAGCGAACATTTCCTTTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCAACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA NGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGANGTGCACGAACGCATCCGCAAGAAGCTGACCGCAATGTCAGCGCAGGACGAGG                                                                                                                                                                                                                                     ]
[+] EMBL BX606843             [                        CCCTCGCGT  ACCGGGTTCAAATTCAGCGCAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACTCCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACA                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM643695             [                       ccgCTCGCGT  ACCGGGTTCAAATTCAGCGCAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTG                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX623554             [                                                             TGAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAAGAAGCTGACGGCAATGTCAGCGCAGGACGAGGATCTGAAAAAGAAGATGGGTGTGTAGAAAGGGTGAGCTCGAANGCAAAGGCACTGTTAGAGTTAAATCCGTACCCGCATGTTAGCCACCAC GTGTGTTGATTCGTTTTTTTTTACTTTTTATTCATTCATTACTTACTCAATGGTAAGCAATATTGGTAG                                                                    ]
[+] EMBL BM618039             [                                                           ccgGAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGG  AAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAGGTACCTGGAGGTGCACGAACGCATCGGCAAGAAGCTGACGGCAATGTCAGCGCAGGACGAGGATCTGAAAAAGAAGATGGGTGTGTAGAAAGGGTGAGCTCGAAGGCAAAGGCACTGTTAGAGTTAAATCCGTACCCGCATGTTAGCCACCACGGGGGGTTAATTCGTTTTTTTTTtttac                                                                                                              ]
[+] EMBL BX627029             [                                                                         AACACGTTTGTTGATGTAGCGAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACTCCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCA                                                                                                                                                                                                                                                                      ]
[+] EMBL BX626425             [                                                                               TTTGTTGATGTAGCGAACATTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACTCCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAAGAAGCTGACGGCAATGTCAGCGCAGGACGAGGATCTGAAAAAGAAGATGGGTGTGTAGAAAGGGT                                                                                                                                                                                                    ]
[+] EMBL BM613283             [                                                                                                  TTTCC TTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCTCATCGAAAAATTCTGTCGACAAGAATCTCTACAAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX615706             [                                                                                                                        ACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAAGAAGCTGACGGCAATGTCAGCGCA                                                                                                                                                                                                                                             ]
[+] EMBL BX616015             [                                                                                                                         CGATTATGCGCCTCGGACACTCGGGAAAAATCGGAATCGGCGGGGGCATCATCAGTGTGCTAGGCATCGGAGCGTCCGTCGCATCGAAAAATGCGGCCGACAAGAATCGCTACGAGAATATGAAAATCCGCGAACGAAGGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTCCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTGGAAAGAGGCAGCAAACGCAATATCAATCGACAATCCCGGATAACTCGTGGTCAGTCGTGAAAGCAAGAAGCAAACTCCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTGCAGCTGAAGCAGGAGATGGAAATCGAAATGATGTCGGAACTGTACAGCCGCATGACACAGGCTGGCCACAAAAAGGGTATCCCACCAAAGTAGGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATCGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAAGAAGCTGACGGCAATGGCAGCGCAGGA                                                                                                                                                                                                                                          ]
[+] EMBL BM628293             [                                                                                                                                                                                                                                                                                                                           ccgGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACACCTCAACCGGCCATACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGCCAAACTACAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGTCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGATCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCATCGGCAAGAAGCTGACGGCAATGTCAGCGCAGGACGAGGATCTGAAAAAGAAGATGGGTGTGTAGAAAGGGTGAGCTCGAAGGCAAAGGCACTGTTAGAGTTAAATCCGTACCCGCATGGCAGCCATCAT GTGTGTTGATTCG TTTTTTTTACTTTTTATTCATTCATTACTTACTCAATGGTAAGCAATATTGGTAGCAGCAGTTCAGGGAGGGTCGGGAACTGCGTATGTTAGTTTTCAGTTGATCATTCGATGCGCATTTCGT]


>consensus_9631#0 CAGAATCCCCCGCCGAAGAACCTTCCCTCGCGTACCGGGTTCAAATTCAGCGCAGAAAGT GAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCCTTTTTTTCCATTGCATACG ATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTA GGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATG AAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGA CGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGG CAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGA AGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACGCGGCCCAGCAGGC CAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCAT GACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACTCGGAGCTGGGAAA GGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGGTGCACGAACGCAT CGGCAAGAAGCTGACGGCAATGTCAGCGCAGGACGAGGATCTGAAAAAGAAGATGGGTGT GTAGAAAGGGTGAGCTCGAAGGCAAAGGCACTGTTAGAGTTAAATCCGTACCCGCATGTT AGCCACCACGTGTGTTGATTCGTTTTTTTTTACTTTTTATTCATTCATTACTTACTCAAT GGTAAGCAATATTGGTAGCAGCAGTTCAGGGAGGGTCGGGAACTGCGTATGTTAGTTTTC AGTTGATCATTCGATGCGCATTTCGT



consensusID : consensus_9631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence
                              [CCCCGAGGTCACACGTTTGTTGATGTAGCGAACATTTCCTTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACTCCTCAACCGGCACACCATGAGCATGCCCCAGCTGGACGCGGCCAGCAGGCCAAACTGAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGGCGACTCGGAGCTGGGAAAGGGAGAATCGGTGTGCATTGACCGGTGT]

[+] EMBL AL931854             [CCCCGAGGTCACACGTTTGTTGATGTAGCGAACATTTCCTTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAGCAAACTCCTCAACCGGCACACCATGAGCATGCCCCAGCTGGACGCGGCCAGCAGGCCAAACTGAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGGCGACTCGGAGCTGGGAAAGGGAGAATCGGTGTGCATTGACCGGTGT]
[+] EMBL BX618919             [                                                                                                              GTGTGCTAGGCATAGGAGCGTTCGTCGCAACGAAAAATACGGTCGACAAGAATCGCGACGAGAATATGAAAATTCGCGAACGAAGGCGCCAATCGAACGGGGGTCAATACGAAGTCAAGGAAGCGCGACGGTACGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCAGCAAACGCAATAT                                                                                                                                                                                                                                                          ]


>consensus_9631#1 CCCCGAGGTCACACGTTTGTTGATGTAGCGAACATTTCCTTTTTTTCCATTGCATACGAT TATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGG CATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAA AATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACG GTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCCCGCTTGAAAGAGGCA GCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGTTGTGAAAGCAAGAAG CAAACTCCTCAACCGGCACACCATGAGCATGCCCCAGCTGGACGCGGCCAGCAGGCCAAA CTGAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATCTGTACAGCCGCATGACAC AGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGGCGACTCGGAGCTGGGAAAGGGAG AATCGGTGTGCATTGACCGGTGT



consensusID : consensus_9631#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence
                              [CCGGCTCCACCGCCGTACAGTGTTTCGTAAGAACCTTCCCTCGCGTACCGGGTTCAAATTCAGCACAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCAAACATTTCCTTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCA]

[+] EMBL BM580788             [CCGGCTCCACCGCCGTACAGTGTTTCGTAAGAACCTTCCCTCGCGTACCGGGTTCAAATTCAGCACAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCAAACATTTCCTTTTTTTCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCATCATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCGCTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGTCAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCA]


>consensus_9631#2 CCGGCTCCACCGCCGTACAGTGTTTCGTAAGAACCTTCCCTCGCGTACCGGGTTCAAATT CAGCACAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCAAACATTTCCTTTTTT TCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCAT CATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCG CTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGT CAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9631#0      -------------CAGAATCCCCCGCCGAAGAACCTTCCCTCGCGTACCGGGTTCAAATT 47
consensus_9631#1      ------------------------------------------------------------
consensus_9631#2      CCGGCTCCACCGCCGTACAGTGTTTCGTAAGAACCTTCCCTCGCGTACCGGGTTCAAATT 60
                                                                                  

consensus_9631#0      CAGCGCAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCGAACATTTCCTTTTTT 107
consensus_9631#1      --------------CCCCGAGGTCA-CACGTTTGTTGATGTAGCGAACATTTCCTTTTTT 45
consensus_9631#2      CAGCACAGAAAGTGAAACAATTCCAACACGTTTGTTGATGTAGCAAACATTTCCTTTTTT 120
                                       * *   ** ****************** ***************

consensus_9631#0      TCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCAT 167
consensus_9631#1      TCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCAT 105
consensus_9631#2      TCCATTGCATACGATTATGCGCCTCGGACATTTGGGAAAAATCGGAATCGGCTGGGGCAT 180
                      ************************************************************

consensus_9631#0      CATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCG 227
consensus_9631#1      CATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCG 165
consensus_9631#2      CATCAGTGTGCTAGGCATTGGAGCGTTCGTCGCATCGAAAAATTCGGTCGACAAGAATCG 240
                      ************************************************************

consensus_9631#0      CTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGT 287
consensus_9631#1      CTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGT 225
consensus_9631#2      CTACGAGAATATGAAAATTCGCGAACGAATGCGCCAATCGAACGTGGGTCAATACGAAGT 300
                      ************************************************************

consensus_9631#0      CAAGGAAGCGCGACGGTTCGACGCATAAGGGAAACAACCGAAACACCCAGGAGCCTACCC 347
consensus_9631#1      CAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCAACCGAAACACCCAGGAGCCTACCC 285
consensus_9631#2      CAAGGAAGCGCGACGGTTCGACGCATAAGGGAAGCA------------------------ 336
                      ********************************* **                        

consensus_9631#0      CGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGT 407
consensus_9631#1      CGCTTGAAAGAGGCAGCAAACGCAATATCAATCGACAATTTTGGATAACTTGTGGTTAGT 345
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TGTGAAAGCAAGAAGCAAACACCTCAACCGGCCACACCATGAGCATGCCCCAGCTGGACG 467
consensus_9631#1      TGTGAAAGCAAGAAGCAAACTCCTCAACCGGC-ACACCATGAGCATGCCCCAGCTGGACG 404
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      CGGCCCAGCAGGCCAAACTGCAGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATC 527
consensus_9631#1      CGGCC-AGCAGGCCAAACTG-AGCTGATGCAGGAGATGGAAATCGAAATGATGTCGGATC 462
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGCCGACT 587
consensus_9631#1      TGTACAGCCGCATGACACAGGCTTGCCACAAAAAGTGTATCCCACCAAAGTATGGCGACT 522
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      CGGAGCTGGGAAAGGGAGAATCGGTGTGCATTGACCGGTGTGTGGCAAAGTACCTGGAGG 647
consensus_9631#1      CGGAGCTGGGAAAGGGAGAATCGGTGTGCATTGACCGGTGT------------------- 563
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TGCACGAACGCATCGGCAAGAAGCTGACGGCAATGTCAGCGCAGGACGAGGATCTGAAAA 707
consensus_9631#1      ------------------------------------------------------------
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      AGAAGATGGGTGTGTAGAAAGGGTGAGCTCGAAGGCAAAGGCACTGTTAGAGTTAAATCC 767
consensus_9631#1      ------------------------------------------------------------
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      GTACCCGCATGTTAGCCACCACGTGTGTTGATTCGTTTTTTTTTACTTTTTATTCATTCA 827
consensus_9631#1      ------------------------------------------------------------
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TTACTTACTCAATGGTAAGCAATATTGGTAGCAGCAGTTCAGGGAGGGTCGGGAACTGCG 887
consensus_9631#1      ------------------------------------------------------------
consensus_9631#2      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TATGTTAGTTTTCAGTTGATCATTCGATGCGCATTTCGT 926
consensus_9631#1      ---------------------------------------
consensus_9631#2      ---------------------------------------
                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)