These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 977 fasta sequence [GCAGAATCGCGCACGAGGATCACTTCCACCTGTTCCATCAGGTGATGGGCATTTTGGAGCTGCCGGCACCGCTCGTCTACCGGGACTGCTACCGGGAGGGGCTGCAGAACGGGTTGGATTGCTTCTTCCAGCTGCTGAAACATCACGGTACGTTTAAGGAAAGCTACACCCTCATCTACCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAACCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGAGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGCATCGATGAGCGATAGTCGTGCGATAGTCGATGCAGGAGAAACGGCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGGAACGACTTGCTGCCCACGCACTGGACAGAGCTGGTGGCAGTGCTAGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGGACGCACTGTCCGTGAAGGCGGCCCGCCCATGCTCGAGGACATCTTCGACGATGTGATCCCGGTTCGTTGCAGCATCCATCCCGNACGAACGCGCCAGATGGGCCACGAAGTCTGGTGACACCGCTGGGTGAAGGCAAAAGCCCGGGGGGCCAGGTGGTTTAAAGGCTTTCGGAAACCGGGGGGAAANCGGGGGAGACCTTTAAACAGGGGCAGGTTTCGAGTNGNCACAGTGGCCCCTGTGANAAGACCCATTGAAGGGGACNNTGTNTGAACGCGGTGGGTTGNGCACCACAGTGGCNGCGCNCTGGGGCACAAAGACAGCCGAACGGGAGTTGCAAACCGCGG] [+] EMBL BX467500 [GCAGAATCGCGCACGAGGATCACTTCCACCTGTTCCATCAGGTGATGGGCATTTTGGAGCTGCCGGCACCGCTCGTCTACCGGGACTGCTACCGGGAGGGGCTGCAGAACGGGTTGGATTGCTTCTTCCAGCTGCTGAAACATCACGGTACGTTTAAGGAAAGCTACACCCTCATCTACCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAACCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGAGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGCATCGATGAGCGATAGTCGTGCGATAGTCGATGCAGGAGAAACGGCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGGAACGACTTGCTGCCCACGCACTGGACAGAGCTGGTGGCAGTGCTAGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGGACGCACTGTCCGTGAAGGCGGCCCGCCCATGCTCGAGGACATCTTCGACGATGTGATCCCGGTTCGTTGCAGCATCCATCCCGNACGAACGCGCCAGATGGGCCACGAAGTCTGGTGACACCGCTGGGTGAAGGCAAAAGCCCGGGGGGCCAGGTGGTTTAAAGGCTTTCGGAAACCGGGGGGAAANCGGGGGAGACCTTTAAACAGGGGCAGGTTTCGAGTNGNCACAGTGGCCCCTGTGANAAGACCCATTGAAGGGGACNNTGTNTGAACGCGGTGGGTTGNGCACCACAGTGGCNGCGCNCTGGGGCACAAAGACAGCCGAACGGGAGTTGCAAACCGCGG] consensusID : consensus_973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGCCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAATCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGCGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGGCTCGATGAGCGATAGTCGTGCGATAGTCGATGGAGGAGAAACGTCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGCAATGACTTACTGCCCACGCACTGGACGGAGCTGGTGGCGGTGCTGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGACGCACTGTCCGTGAAGCGGCCCGCCCTGCTCGAAGACATCTTCGACGATGTGATCCGGTTCGTGCAGCATCCATCACCGACGACGCGCCAGATGGCCCACAATCTGGTGACGCGCTGGCTGAAGCAAAACCCGGGGCAGTGTTAGCTCGAACGGGACGGCACTGACGGCGTTCGTGCAGTGCCTGA] [+] EMBL BM646106 [CCGCCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAATCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGCGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGGCTCGATGAGCGATAGTCGTGCGATAGTCGATGGAGGAGAAACGTCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGCAATGACTTACTGCCCACGCACTGGACGGAGCTGGTGGCGGTGCTGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGACGCACTGTCCGTGAAGCGGCCCGCCCTGCTCGAAGACATCTTCGACGATGTGATCCGGTTCGTGCAGCATCCATCACCGACGACGCGCCAGATGGCCCACAATCTGGTGACGCGCTGGCTGAAGCAAAACCCGGGGCAGTGTTAGCTCGAACGGGACGGCACTGACGGCGTTCGTGCAGTGCCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_973#0 GCAGAATCGCGCACGAGGATCACTTCCACCTGTTCCATCAGGTGATGGGCATTTTGGAGC 60 consensus_973#1 ------------------------------------------------------------ consensus_973#0 TGCCGGCACCGCTCGTCTACCGGGACTGCTACCGGGAGGGGCTGCAGAACGGGTTGGATT 120 consensus_973#1 ------------------------------------------------------------ consensus_973#0 GCTTCTTCCAGCTGCTGAAACATCACGGTACGTTTAAGGAAAGCTACACCCTCATCTACC 180 consensus_973#1 -------------------------------------------------------CCGCC 5 * ** consensus_973#0 GGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAACCCGGCGACGGCGATCGCTTTCG 240 consensus_973#1 GGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAATCCGGCGACGGCGATCGCTTTCG 65 ************************************* ********************** consensus_973#0 TGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGC 300 consensus_973#1 TGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGC 125 ************************************************************ consensus_973#0 TGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGA 360 consensus_973#1 TGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGC 185 *********************************************************** consensus_973#0 GGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAG 420 consensus_973#1 GGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAG 245 ************************************************************ consensus_973#0 CAACGTACGAAGCATCGATGAGCGATAGTCGTGCGATAGTCGATGCAGGAGAAACGGCCG 480 consensus_973#1 CAACGTACGAAGGCTCGATGAGCGATAGTCGTGCGATAGTCGATGGAGGAGAAACGTCCG 305 ************ ******************************* ********** *** consensus_973#0 GTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGGA 540 consensus_973#1 GTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGCA 365 ********************************************************** * consensus_973#0 ACGACTTGCTGCCCACGCACTGGACAGAGCTGGTGGCAGTGCTAGCGGTCGCGAGATATC 600 consensus_973#1 ATGACTTACTGCCCACGCACTGGACGGAGCTGGTGGCGGTGCT-GCGGTCGCGAGATATC 424 * ***** ***************** *********** ***** **************** consensus_973#0 GATGAAATTTCCATCCCACTAATGGAGCTGGGACGCACTGTCCGTGAAGGCGGCCCGCCC 660 consensus_973#1 GATGAAATTTCCATCCCACTAATGGAGCTGG-ACGCACTGTCCGTGAAG-CGGCCCGCCC 482 ******************************* ***************** ********** consensus_973#0 ATGCTCGAGGACATCTTCGACGATGTGATCCCGGTTCGTTGCAGCATCCATCCCGNACGA 720 consensus_973#1 -TGCTCGAAGACATCTTCGACGATGTGATCC-GGTTCGT-GCAGCATCCATCACCGACGA 539 ******* ********************** ******* ************ * **** consensus_973#0 ACGCGCCAGATGGGCCACGAAGTCTGGTGACACCGCTGGGTGAAGGCAAAAGCCCGGGGG 780 consensus_973#1 -CGCGCCAGATGGCCCACAA--TCTGGTGACGC-GCTGGCTGAAG-CAAAACCCGGGGCA 594 ************ **** * ********* * ***** ***** ***** ** *** consensus_973#0 GCCAGGTGGTTTAAAGGCTTTCGGAAACCGGGGGGAAANCGGGGGAGACCTTTAAACAGG 840 consensus_973#1 GT--GTTAGCTCGAACGGGACGGCA---CTGACGGCGTTCGTGCAGTGCCTGA------- 642 * * * * * ** * * * * * ** ** * *** consensus_973#0 GGCAGGTTTCGAGTNGNCACAGTGGCCCCTGTGANAAGACCCATTGAAGGGGACNNTGTN 900 consensus_973#1 ------------------------------------------------------------ consensus_973#0 TGAACGCGGTGGGTTGNGCACCACAGTGGCNGCGCNCTGGGGCACAAAGACAGCCGAACG 960 consensus_973#1 ------------------------------------------------------------ consensus_973#0 GGAGTTGCAAACCGCGG 977 consensus_973#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||