These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 891 fasta sequence [ACTGGAAAAACATAACGAATCGCAGTCTGCCGCGACGGGGAAAATTGCTAG-TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC-GTGATAATCAAGCAAAAC-GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG-ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA-GGACTTTCT-GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA-GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAACAAAACGGTGAAAAAAAAAAAAAAAAAAAAGGC] [+] EMBL CNS09GXA [ACTGGAAAAACATAACGAATCGCAGTCTGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGTATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGGACTTTCTGGCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACGACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTTCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAACAAAACGGTGAAAAAAAAAAAAAAAAAAAAGGC] [+] EMBL CNS093LW [ CGCAGTCTGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGCCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAAAGTAAAACAAAA AAAAAAA ] [+] EMBL BM615132 [ ccgCGCAGTCCGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATC ] [-] EMBL CNS09GXB [ aTCTGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCAAAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAAAACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTAAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTATGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACGACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAAAAAAACGGTGAAAAAAAAA ] [+] EMBL CNS09AQR [ AATTGCTAGATTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCCTGTGATAATCAAGCAAAACGGGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTTAAACAAAAaaa ] [+] EMBL BX628045 [ G TTTTCTACNAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGTATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCAGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATNCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGG ] [+] EMBL BM592220 [ ccgGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTAAACTAATTTATCTGCATG ] [+] EMBL BM595325 [ ccgAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCT ] [+] EMBL BX622784 [ TTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGTATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCCAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATANGGAACCATTCCTTGTCT ] [+] EMBL BX625505 [ CGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTAAACTAATTTATCTGCATGTTGCTTCACAACTACG ] [+] EMBL BX618359 [ CGTTGTATTTTCGTTGAATAAAAGAATAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATT ] [-] EMBL CNS093LX [ ctTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCCACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAA ] [-] EMBL CNS09AQS [ CCGACGGATTGAGGTATTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCA ] consensusID : consensus_9752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence [GCAGAATCGGCACGTAGGCGCAGTCCGCCGCGACGGGGCNAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATTCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAGAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCAGGTGGTNGATGCTGCTACAGCGAGGCAGCTGGCTTGTAGTGGCGTATATTTNNNACCTTCTTAAAGTCATATCGNTATCAGTGCGTGTTGGCAACAACGGCTTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGCATTAACTGTTTANCATGTAGGCAACANAGGATGNCATAGTTACCAGGAACTCTCCCAACATGACAACTTTCCGACTCACTGGTTCACACTTCAGGGTTCCCCATTAAGGGAAACCCAAATTTACCCATTGGGTCCTAAAACCTACACTTTTCATTCTGGCCNATGNGTTTNNGGATTTCCAACAAACTTTACGTTNGATACAAAGTTACCATTACCTAG] [+] EMBL BX467537 [GCAGAATCGGCACGTAGGCGCAGTCCGCCGCGACGGGGCNAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAGAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCAGGTGGTNGATGCTGCTACAGCGAGGCAGCTGGCTTGTAGTGGCGTATATTTNNNACCTTCTTAAAGTCATATCGNTATCAGTGCGTGTTGGCAACAACGGCTTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGCATTAACTGTTTANCATGTAGGCAACANAGGATGNCATAGTTACCAGGAACTCTCCCAACATGACAACTTTCCGACTCACTGGTTCACACTTCAGGGTTCCCCATTAAGGGAAACCCAAATTTACCCATTGGGTCCTAAAACCTACACTTTTCATTCTGGCCNATGNGTTTNNGGATTTCCAACAAACTTTACGTTNGATACAAAGTTACCATTACCTAG] [+] EMBL AGA282000 [ AATTGCTAGTTTTCTACACCAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATTCATCGAACGA ] [+] EMBL AGA285569 [ AGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATTCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAA AAAGCA ] consensusID : consensus_9752#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CGAGCAGATCGCCCACGGCTTAATCGCGCGACGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAACGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTCTCGTTGAATAAAAGAACGAAAATGTCGCAAGAAGTGGACGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTAGTCCGACAAGGCCCGGTCGGATGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTTCTACGGGTGCGGTACCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTACTGCTGATCCGTCATCCAAAAAACCCGACGGACTGAGGGTATTCGTGCGTGGCGCCGCGGTGGTGATGCTGCTAACCAGGCGGAGGCACGCCTGGGCTATGCTGTGGCGTATATTTTACCTTACTTAAAGTATATTTANACGTGCACGTGTAT] [+] EMBL AL695682 [CGAGCAGATCGCCCACGGCTTAATCGCGCGACGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAACGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTCTCGTTGAATAAAAGAACGAAAATGTCGCAAGAAGTGGACGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTAGTCCGACAAGGCCCGGTCGGATGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTTCTACGGGTGCGGTACCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTACTGCTGATCCGTCATCCAAAAAACCCGACGGACTGAGGGTATTCGTGCGTGGCGCCGCGGTGGTGATGCTGCTAACCAGGCGGAGGCACGCCTGGGCTATGCTGTGGCGTATATTTTACCTTACTTAAAGTATATTTANACGTGCACGTGTAT] consensusID : consensus_9752#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 601 fasta sequence [GACCCACGCGTCCGCGGACGCGTGGGCGACGGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGATTGCTGGACTTGAAGCGCATACATTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTAAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCAGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCCCGGNAAAAAAAA] [+] EMBL BM578694 [GACCCACGCGTCCGCGGACGCGTGGGCGACGGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGATTGCTGGACTTGAAGCGCATACATTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTAAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCAGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCA ] [-] EMBL AGA284269 [ ACCTTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGTTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCCCGGNAAAAAAAA] consensusID : consensus_9752#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATAGGAACCATTCCTTGTCTAAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACATACAACAACACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAACCAAAAAAAA] [-] EMBL AGA280303 [GATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATAGGAACCATTCCTTGTCTAAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACATACAACAACACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAACCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9752#1 ---GCAGAATCGGCACGTAGGCGCAGTCCGCCGCGACGGGGCNAAATTGCTAGTTTTCTA 57 consensus_9752#2 CGAGCAGATCGCCCAC---GGCTTAATC--GCGCGACGGG--AAAATTGCTAGTTTTCTA 53 consensus_9752#3 -------GACCCACGCGTCCGCGGACGCGTGGGCGACGGGG-AAAATTGCTAGTTTTCTA 52 consensus_9752#0 -ACTGGAAAAACATAACGAATCGCAGTCTGCCGCGACGGGG-AAAATTGCTAGTTTTCTA 58 consensus_9752#4 ----------------------------------GATAAGGACTTTCTGCTGATCGTCAT 26 ** * **** * ** consensus_9752#1 CAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAA-GCTGTTATCCG 116 consensus_9752#2 CAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAA-GCTGTTATCCG 112 consensus_9752#3 CAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAA-GCTGTTATCCG 111 consensus_9752#0 CAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCCG 118 consensus_9752#4 CCAAAACCCGACGGACTGAGGTATTCGTGC--GTGGGCGCGGTGGTGATGCTGCTAC--- 81 * *** ** ** ** * * * * * * **** ** consensus_9752#1 TGATAATCAA-GCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTT-TCGTTGA 174 consensus_9752#2 TGATAATCAACGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTCTCGTTGA 172 consensus_9752#3 TGATAATCAA-GCAAAACGGATTGCTGGACTTGAAGCGCATACATTGTATTT-TCGTTGA 169 consensus_9752#0 TGATAATCAA-GCAAAACGGGCTGCAGGACTTGAATCGCATACGTTGTATTT-TCGTTGA 176 consensus_9752#4 ---------A-GCGAGGCAGCTGGCTTG---TGTGGCGTATATTTTTCCTTC-TTTTGTT 127 * ** * * * ** * ** ** *** ** ** * * consensus_9752#1 ATAAAAGAA-GAAAATGTCGCAAGAAGTGGA-GGAAACCCTAAAGCGCATCCAATCGCAC 232 consensus_9752#2 ATAAAAGAACGAAAATGTCGCAAGAAGTGGACGGAAACCCTAAAGCGCATCCAATCGCAC 232 consensus_9752#3 ATAAAAGAA-GAAAATGTCGCAAGAAGTGGA-GGAAACCCTAAAGCGCATCCAATCGCAC 227 consensus_9752#0 ATAAAAGAA-GAAAATGTCGCAAGAAGTGGA-GGAAACCCTAAAGCGCATCCAATCGCAC 234 consensus_9752#4 ATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGT 187 *** * * *** * * * * ** ** * * * ** consensus_9752#1 AAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTC 292 consensus_9752#2 AAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTC 292 consensus_9752#3 AAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTAAAAAGTACCCTC 287 consensus_9752#0 AAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTC 294 consensus_9752#4 CCTGGTCC---GGGGACGATTTAATTTA--AATGTAGCAAAAGATGCATAATACAGACTC 242 ** ** ****** * * **** ** ** * ** * *** consensus_9752#1 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCT-GTCCGACAAGGCCCG 351 consensus_9752#2 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTAGTCCGACAAGGCCCG 352 consensus_9752#3 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCT-GTCAGACAAGGCCCG 346 consensus_9752#0 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCT-GTCCGACAAGGCCCG 353 consensus_9752#4 AATGAATTGAT----ATGTAAT-TGTTCCATAG--GAACCATTC--CTTGTCTAAACTAA 293 * * * ** * * * * * * ** *** * * * * consensus_9752#1 GTCGG-TGGTCCGTGATCTGGATTCATCGAACGATCTCTCCTTT-CTACGGGTGCGGTCC 409 consensus_9752#2 GTCGGATGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTTCTACGGGTGCGGTAC 412 consensus_9752#3 GTCGG-TGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTT-CTACGGGTGCGGT-C 403 consensus_9752#0 GTCGG-TGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTT-CTACGGGTGCGGT-C 410 consensus_9752#4 TTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACATACAACAACACACTAGGCAC 353 * ** ** * * * * * * ** ** * consensus_9752#1 AAGAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTT-CTGCTGATC-GTCATCCAA 467 consensus_9752#2 CAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTACTGCTGATCCGTCATCCAA 472 consensus_9752#3 CAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTT-CTGCTGATC-GTCATCCAA 461 consensus_9752#0 CAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTT-CTGCTGATC-GTCATCCAA 468 consensus_9752#4 AACACAAGGTATGAAGATGGTT--TTCTTAACACATTTTTATTATTCATAGATCATCTAT 411 * * * * ***** * * * * *** * * ** ***** * consensus_9752#1 AA--CCCGACGGACTGAGG-TATTCGTGCGTGGGCGCAGGTGGTNGATGCTGCTA----- 519 consensus_9752#2 AAAACCCGACGGACTGAGGGTATTCGTGCGTGGCGCCGCGGTGGTGATGCTGCTAACCAG 532 consensus_9752#3 AA--CCCGACGGACTGAGG-TACTCGTGCGTG--CGCGCGGTGGTGATGCTGCTA----- 511 consensus_9752#0 AA--CCCGACGGACTGAGG-TACTCGTGCGTG--CGCGCGGTGGTGATGCTGCTA----- 518 consensus_9752#4 AAAAGAAAACAAAACGTAA--ACCAAAAAAAA---------------------------- 441 ** ** * * * consensus_9752#1 -CAGCGAGGCAGCTGGCTTGTAGTGGCGTATATTTNNNACCTTCTTAAAGTCATATCGNT 578 consensus_9752#2 GCGGAGGCACGCCTGGGCTATGCTGTGGCGTATATTTTACCTTACTTAAAGTATATTTAN 592 consensus_9752#3 -CAGCGAGGCAGCTGGCTTG---TGTGGCGTATATTTTTCCTTCTTTT-GTTATATTTTA 566 consensus_9752#0 -CAGCGAGGCAGCTGGCTTG---TGTGGCGTATATTTTCCCTTTTTTT-GTTCTATTTTA 573 consensus_9752#4 ------------------------------------------------------------ consensus_9752#1 ATCAGTGCGTGTTGGCAACAACGGCTTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTG 638 consensus_9752#2 ACGTGCACGTGTAT---------------------------------------------- 606 consensus_9752#3 TC--GTGCGTGTTGGCAACAACGCCCGGNAAAAAAAA----------------------- 601 consensus_9752#0 TC--GTGCGTGTTGGCAACAACG--CTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTG 629 consensus_9752#4 ------------------------------------------------------------ consensus_9752#1 GTCCGGGGACGCATTAACTGTT------TANCATGTAGGCAACANAGGATGNCATAGTTA 692 consensus_9752#2 ------------------------------------------------------------ consensus_9752#3 ------------------------------------------------------------ consensus_9752#0 GTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTG 689 consensus_9752#4 ------------------------------------------------------------ consensus_9752#1 CCAGG-AACTCTCCCAACATGACAACTTTCCGACTCACTGGTTCACACTTCAGGGTTCCC 751 consensus_9752#2 ------------------------------------------------------------ consensus_9752#3 ------------------------------------------------------------ consensus_9752#0 ATATGTAATTGTTCCATAGGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTT 749 consensus_9752#4 ------------------------------------------------------------ consensus_9752#1 CATTAAGGGAAACCCAAATTTACCCATTGGGTCCTAAAACCTACACTTTTCATTCTGGCC 811 consensus_9752#2 ------------------------------------------------------------ consensus_9752#3 ------------------------------------------------------------ consensus_9752#0 CACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAAC 809 consensus_9752#4 ------------------------------------------------------------ consensus_9752#1 NATGNGTTTNNGGATTTCCAACAAACTTTACGTTNGATACAAAGTTACCATTACCTAG-- 869 consensus_9752#2 ------------------------------------------------------------ consensus_9752#3 ------------------------------------------------------------ consensus_9752#0 ACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAACAAAACGGTGA 869 consensus_9752#4 ------------------------------------------------------------ consensus_9752#1 ---------------------- consensus_9752#2 ---------------------- consensus_9752#3 ---------------------- consensus_9752#0 AAAAAAAAAAAAAAAAAAAGGC 891 consensus_9752#4 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||