These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1095 fasta sequence [CCGCCCACGCGTCCGGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGTAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCACCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTAACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCGTTGCGCAGTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGAACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGGCGAGGAAGCACCGCTGCCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAGACCATTTCGACCATCATTTCGTAGCGAATGAATGAAACGACGAAGCACATGGTATGCCTTTTGTGAAAATCGTGTTTTCTGAACTGCAAGAGCTAGTAGTCACGAAAACAGGAAAGGGTGACGGTAAGCAAGCTAAAAAGTATTACCTCGCAAACCCATCAACATGGAC] [+] EMBL BM626134 [CCGCCCACGCGTCCGGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGTAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCACCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTAACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCGTTGCGCAGTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGAACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGGCGAGGAAGCACCGCTGCCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGT ] [+] EMBL BM621122 [ ccgGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGGCGAGGAGGCACCGCTG CCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAGACCATTTCGACCATCATTTCGTAGCGAATGAATGAAACGACGAAGCACATGGTATGCCTTTTGTGAAAATCGTGTTTTCTGAACTGCAAGAGCTAGTAGTCACGAAAACAGGAAAGGGTGACGGTAAGCAAGCTAAAAAGTATTACCTCGCAAACCCATCAACATGGAC] consensusID : consensus_9774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 975 fasta sequence [TGTTGGCATTTGTACAAACACAGCAAACATTG-GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG-ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG-TTGCGCAGTGCGTGGAGCTAA-CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC-AG-AAG-AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC-TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT-GGAC-TTCCAGGT-GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT-CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT-CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG-CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAAAAAAAAAAAAAAAAGGCCCATGTGCCCGGGCT] [+] EMBL CNS09E6J [TGTTGGCATTTGTACAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTTGCTGCCACCGGTATCTATTTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGC ] [+] EMBL CNS0968F [ GTTGGCATTTGTACAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAC ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCATGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTG ] [+] EMBL CNS096BX [ TTGTACAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCGTTTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTTTTCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAAAAAAAAAAAAAAAAGGCC ] [+] EMBL CNS099X8 [ ggaAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTACCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC ] [+] EMBL CNS099O8 [ cAACATTGAGAGCGAG CGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAC ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTTCTGTGGTGGT CGCTGA ] [+] EMBL BM596598 [ ccgATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGTAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAGCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTAACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGGACTTTCCAGGTGGGGCGAGGAGGCACCGCTGCCCGGGATCGAG ] [+] EMBL CNS09ARU [ GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACA CAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTACCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGC ] [+] EMBL CNS09MEJ [ GAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAC ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAA ] [+] EMBL CNS09A65 [ AAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAG ] [+] EMBL CNS095QM [ AGCAGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAG AGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACGGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTTCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTA AAAAAAAAAAATTAAAAAGGCCCATGTGCCCGGGCT] [-] EMBL CNS09MEK [ GGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAGAAAAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAAT ] [-] EMBL CNS096BY [ AAACGAGAAAAAGGTGCCCGCCAGCCCCAGCGCAGAAAAAACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGTTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAAACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATTTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGTGCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGTCAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAG TACACGCTAATGCA ] [+] EMBL BX613665 [ CGAGAAACAGGTGCCCGCCAGCCCCAGCGCAGCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAACGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGA ] [+] EMBL BX613055 [ CGAGAAACAGGGGCCCGCCAGCCCCAGCGCAGCACAGAAACGCCCGAAGAAAGCTAAACAGAAACAGCCGAAAAGAAGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCGGAGTg ] [-] EMBL CNS0968G [ TATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAAGCGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCATGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCgga ] [-] EMBL CNS099O9 [ GGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCCGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAG TACACGCTAATGCAATAATAAAGCCCGCGCAg ] [-] EMBL CNS09E6K [ TCCACGAGGAGATACAAGAAAGAAACCAAACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAG ] [-] EMBL CNS09ARV [ AGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGA CTACACGCTAATGCAATAATAAAGCCCG ] consensusID : consensus_9774#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [GCAAGAATCCCCCGAGNGTATTGGAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGTGTTTTCTGTTGCTGGCCAGTGAATTCAGTGCGTAAACACACAACTGAAGTGTTTGCCTTTCCAGCGACAGCAGGCAAATGCACAGCTGCTGAAAACTGAGAAACATGGTGCCCTGCCAGCCCCAGCTGCAGCACAGACACTGCCCTGAAGAAAGCTTAACAGAAACATGCCTGAAAAGATGAGCTGACTGGGAAATCTAACCAGCAGCATGCAAAGTCTGAGTTTAGCCATAATTTGTATTTGTATTTGCTGCTCTGCCANCCAAATCCCCGTTGCTGCAGTTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGGAACCAGACGGCAGCGTNTGGAGTTTCAGGTCTGTCAGCGGCTGGACGGTACTGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTACGTTGCTGCNGTGCACCTGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTNTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGTGCGAGGAGGCACCGTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACACCGGCTGCGAGCAGGCACAAGGTCGCA] [+] EMBL AL931354 [GCAAGAATCCCCCGAGNGTATTGGAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGTGTTTTCTGTTGCTGGCCAGTGAATTCAGTGCGTAAACACACAACTGAAGTGTTTGCCTTTCCAGCGACAGCAGGCAAATGCACAGCTGCTGAAAACTGAGAAACATGGTGCCCTGCCAGCCCCAGCTGCAGCACAGACACTGCCCTGAAGAAAGCTTAACAGAAACATGCCTGAAAAGATGAGCTGACTGGGAAATCTAACCAGCAGCATGCAAAGTCTGAGTTTAGCCATAATTTGTATTTGTATTTGCTGCTCTGCCANCCAAATCCCCGTTGCTGCAGTTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGGAACCAGACGGCAGCGTNTGGAGTTTCAGGTCTGTCAGCGGCTGGACGGTACTGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTACGTTGCTGCNGTGCACCTGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTNTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGTGCGAGGAGGCACCGTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACACCGGCTGCGAGCAGGCACAAGGTCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9774#0 ------------------CCGCCCACGCGTCCG-GCGAGCCGAAAGCCGTGAAAAATTAT 41 consensus_9774#1 TGTTGGCATTTGTACAAACACAGCAAACATTGGAGCGAGCCGAAAGCCGTGAAAAATTAT 60 consensus_9774#2 ---------GCAAGAATCCCCCGAGNGTATTGGAGCGAGCCGAAAGCCGTGAAAAATTAT 51 * * * ************************** consensus_9774#0 TTTTACCACTCCAGGGTTTTC-GTTGC-GGCCAGGGAATTCAG-GCGTAAACACACAAC- 97 consensus_9774#1 TTTTACCACTCCAGGGTTTTC-GTTGC-GGCCAGGGAATTCAG-GCGCAAACACACAAC- 116 consensus_9774#2 TTTTACCACTCCAGTGTTTTCTGTTGCTGGCCAGTGAATTCAGTGCGTAAACACACAACT 111 ************** ****** ***** ****** ******** *** *********** consensus_9774#0 GAAG-GTTTGCCTTTCCAGCGACAGCAGGCAAA-GCACAGCG--CGAAAAC-GAGAAACA 152 consensus_9774#1 GAAG-GTTTGCCTTTCCAGCGACAGCAGGCAAA-GCACAGCG--CGAAAAC-GAGAAACA 171 consensus_9774#2 GAAGTGTTTGCCTTTCCAGCGACAGCAGGCAAATGCACAGCTGCTGAAAACTGAGAAACA 171 **** **************************** ******* ****** ******** consensus_9774#0 -GGTGCCC-GCCAGCCCCAGC-GCACCACAGACACG--CCCGAAGAAAGCTTAACAGAAA 207 consensus_9774#1 -GGTGCCC-GCCAGCCCCAGC-GCAG-ACAGACACG--CCCGAAGAAAGCTTAACAGAAA 225 consensus_9774#2 TGGTGCCCTGCCAGCCCCAGCTGCAGCACAGACACTGCCCTGAAGAAAGCTTAACAGAAA 231 ******* ************ *** ******** ** ******************* consensus_9774#0 CAG--CCGAAAAGATGAGC-GAC-GGGAAATCTAACCAGCAGCA-GCAAAGTCTGAGTTT 262 consensus_9774#1 CAG--CCGAAAAGATGAGC-GAC-GGGAAATCTCACCAGCAGCA-GCAAAGTCTGAGTTT 280 consensus_9774#2 CATGCCTGAAAAGATGAGCTGACTGGGAAATCTAACCAGCAGCATGCAAAGTCTGAGTTT 291 ** * ************ *** ********* ********** *************** consensus_9774#0 AGCCATAATT-GTATT---GTTTGC-GCTCTGCCACC-AAATCCCCGTTGC-GCAGT-GC 314 consensus_9774#1 AGCCATAATT-GTATT---GTTTGC-GCTCTGCCACC-AAATCCCCGTTGC-GCAGT-GC 332 consensus_9774#2 AGCCATAATTTGTATTTGTATTTGCTGCTCTGCCANCCAAATCCCCGTTGCTGCAGTTGC 351 ********** ***** ***** ********* * ************* ***** ** consensus_9774#0 GTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAG 374 consensus_9774#1 GTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAG 392 consensus_9774#2 GTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAG 411 ************************************************************ consensus_9774#0 AAG-AACCAGACGGCAGCGTT-GGAGTTTCAGGTC-GTCAGCGGC-GGACGGTAC-GACG 429 consensus_9774#1 AAG-AACCAGACGGCAGCGTT-GGAGTTTCAGGTC-GTCAGCGGC-GGACGGTAC-GACG 447 consensus_9774#2 AAGGAACCAGACGGCAGCGTNTGGAGTTTCAGGTCTGTCAGCGGCTGGACGGTACTGACG 471 *** **************** ************* ********* ********* **** consensus_9774#0 TGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGT 489 consensus_9774#1 TGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGT 507 consensus_9774#2 TGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGT 531 ************************************************************ consensus_9774#0 TCGATTCGTACCAGTT-CGTTGCTGCGGC-CACC-GGTATCTATGTCGCCTGTTTCAGCA 546 consensus_9774#1 TCGATTCGTACCAGTT-CGTTGCTGCGGC-CACC-GGTATCTATGTCGCCTGTTTCAGCA 564 consensus_9774#2 TCGATTCGTACCAGTTACGTTGCTGCNGTGCACCTGGTATCTATGTCGCCTGTTTCAGCA 591 **************** ********* * **** ************************* consensus_9774#0 ACGAGTTTT-CCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGG-GCGAGGA 604 consensus_9774#1 ACGAGTTTT-CCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGG-GCGAGGA 622 consensus_9774#2 ACGAGTTTNTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGTGCGAGGA 651 ******** ****************************************** ******* consensus_9774#0 AGCACCGCTGCCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCG 664 consensus_9774#1 GGCACCGCTGCCC-GGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCG 681 consensus_9774#2 GGCACCG-TGCCC-GGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCG 709 ****** ***** ********************************************** consensus_9774#0 CGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGC 724 consensus_9774#1 CGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGC 741 consensus_9774#2 -GCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCAC-ACCGGCTGC 767 ************************************************* ********* consensus_9774#0 GAG-AGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCG 783 consensus_9774#1 GAG-AGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCG 800 consensus_9774#2 GAGCAGGCACAAGGTCGCA----------------------------------------- 786 *** *************** consensus_9774#0 CTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAAC 843 consensus_9774#1 CTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAAC 860 consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 TTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCG 903 consensus_9774#1 TTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCG 920 consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 CGCATCAACACACGTACCCATAGACCATTTCGACCATCATTTCGTAGCGAATGAATGAAA 963 consensus_9774#1 CGCATCAACACACGTACCCATAAAAAAA--AAAAAAAAAGGCCCATGTGCCCGGGCT--- 975 consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 CGACGAAGCACATGGTATGCCTTTTGTGAAAATCGTGTTTTCTGAACTGCAAGAGCTAGT 1023 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 AGTCACGAAAACAGGAAAGGGTGACGGTAAGCAAGCTAAAAAGTATTACCTCGCAAACCC 1083 consensus_9774#1 ------------------------------------------------------------ consensus_9774#2 ------------------------------------------------------------ consensus_9774#0 ATCAACATGGAC 1095 consensus_9774#1 ------------ consensus_9774#2 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||