Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 998 cluster # 998       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_998#0 length = 510 sequences # 1  
consensus_998#1 length = 443 sequences # 1  

consensusID : consensus_998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence
                              [ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCACCGAGAGAAAGCCAGAGTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCCTGCAGCAGAACTCCCTGCCCTGCCCGGATCG]

[+] EMBL BX627268             [ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCACCGAGAGAAAGCCAGAGTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCCTGCAGCAGAACTCCCTGCCCTGCCCGGATCG]


>consensus_998#0 ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCACCGAGAGAAAGCCAGA GTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACGC CTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGT CGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCT CGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTT CCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTG CGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTG CGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCCT GCAGCAGAACTCCCTGCCCTGCCCGGATCG



consensusID : consensus_998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence
                              [ATCGGCCGAGGTGAGAGAAAGCCAGAGTGCAAATGATCCAACCGTTCGTCTGCATACTGATCGTGGCGGCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC]

[+] EMBL AL932671             [ATCGGCCGAGGTGAGAGAAAGCCAGAGTGCAAATGATCCAACCGTTCGTCTGCATACTGATCGTGGCGGCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCCTCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC]


>consensus_998#1 ATCGGCCGAGGTGAGAGAAAGCCAGAGTGCAAATGATCCAACCGTTCGTCTGCATACTGA TCGTGGCGGCGGTTGCGCCAACGCCTTCATGTACAAACACCCGTACAACCACCATCAGGC GGCGGTGCTGGCCCACGAGCCGGTCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCC CGCCTTCCGGCCCGCCTCCTTCCTCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACAC GCTGCGCATCCCGCTGCAGCGGTTCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCC GGAAACGAAGTGCTTCCTGCGCTGCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAA GGGTGCCGATCTGGACCGGCACTGCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTT CTCCAACCGCCATCTGGTCTGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_998#0      ATTCCATCAGCGCTTCAGCAGGACATTCGCAGGACACCCACCCAC-CGAGAGAAAGCCAG 59
consensus_998#1      -----------------------------------ATCGGCCGAGGTGAGAGAAAGCCAG 25
                                                        * *  ** *   *************

consensus_998#0      AGTGCAAAATGATCAAACCGTTCGTCTGCATACTGATCGTGGCGGCCGGTTGCGCCAACG 119
consensus_998#1      AGTGCAAA-TGATCCAACCGTTCGTCTGCATACTGATCGTGGCGGC-GGTTGCGCCAACG 83
                     ******** ***** ******************************* *************

consensus_998#0      CCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGG 179
consensus_998#1      CCTTCATGTACAAACACCCGTACAACCACCATCAGGCGGCGGTGCTGGCCCACGAGCCGG 143
                     ************************************************************

consensus_998#0      TCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCC 239
consensus_998#1      TCGTACCGGTGGAGTTTGTAAAGCACACCACCAGCCCCGCCTTCCGGCCCGCCTCCTTCC 203
                     ************************************************************

consensus_998#0      TCGAGGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGT 299
consensus_998#1      TCGANGTGATGGAGGTCGTGCTGGACTGCTTCAACACGCTGCGCATCCCGCTGCAGCGGT 263
                     **** *******************************************************

consensus_998#0      TCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCT 359
consensus_998#1      TCCCCTCCTACCTGTCCGGCATCTTCCCGGAGGATCCGGAAACGAAGTGCTTCCTGCGCT 323
                     ************************************************************

consensus_998#0      GCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACT 419
consensus_998#1      GCGTCGCCATCAAGCTGGGCGTGTACTGCGACGAGAAGGGTGCCGATCTGGACCGGCACT 383
                     ************************************************************

consensus_998#0      GCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC 479
consensus_998#1      GCGTACAGTTCGGGCTGGGCGAATGCTGCGAAAACTTCTCCAACCGCCATCTGGTCTGCC 443
                     ************************************************************

consensus_998#0      TGCAGCAGAACTCCCTGCCCTGCCCGGATCG 510
consensus_998#1      -------------------------------
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)