cluster # 999

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Anopheles gambiae
cluster # 999 cluster # 999 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_999#0 length = 614 sequences # 1

consensus_999#1 length = 591 sequences # 1

consensusID : consensus_999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [CCGAACGGTAATGGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACCGCCGCACACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGTGCCTGGCGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAACAGCAGCATCAGCAGCAGCAGCATCCGTCGAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGAGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGGAGCAGTAGCAGCAGCAGCATGGTCGTGATATACCCAGCGATCGCCATTCCCACAGCGCGAACC]

[+] EMBL BM622153             [CCGAACGGTAATGGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACCGCCGCACACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGTGCCTGGCGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAACAGCAGCATCAGCAGCAGCAGCATCCGTCGAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGAGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGGAGCAGTAGCAGCAGCAGCATGGTCGTGATATACCCAGCGATCGCCATTCCCACAGCGCGAACC]




>consensus_999#0
CCGAACGGTAATGGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGA
GCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGT
GTTGGAGGCAGTACTGGTACCGCCGCACACTACCCAGGAGAGTACGACAGTGGGATGCAT
CTGCCCGGTGGTATTGTGCCTGGCGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGA
AAACATCACCAACAGCAGCATCAGCAGCAGCAGCATCCGTCGAACCGTCGGCAGTATGGA
GATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGT
ACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTAC
ACCGAATGAGAGATTTAGGGGCAGCCCGAGCCTGCCGGCTGATGTAATTAACGTGTGCAA
TCTTTAACTTGATATTTAAAGCGGCACGGAACCGAGCGCTGCGCTGATCTATACTTTCAA
ACAGTAGCAGGAGCAGTAGCAGCAGCAGCATGGTCGTGATATACCCAGCGATCGCCATTC
CCACAGCGCGAACC

consensusID : consensus_999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [CCGGGAGCAGCTGTAGGTGGCTCCATTGGCAATGGTAACAGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACGGCCGCGCACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGCGCCTGGGGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAGCAGCAGCAGCAGCAGCAACATCCGTCAAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGTGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGCAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGCAACAGCATGGTCGTG]

[+] EMBL BM615324             [CCGGGAGCAGCTGTAGGTGGCTCCATTGGCAATGGTAACAGTGTGGGAGGTCGTCACGCAGGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCACCGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACGGCCGCGCACTACCCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGCGCCTGGGGCGAGCTCAAAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAGCAGCAGCAGCAGCAGCAACATCCGTCAAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGTGCCTGCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGCAACCGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGCAACAGCATGGTCGTG]




>consensus_999#1
CCGGGAGCAGCTGTAGGTGGCTCCATTGGCAATGGTAACAGTGTGGGAGGTCGTCACGCA
GGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCAC
CGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACGGCCGCGCACTAC
CCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGCGCCTGGGGCGAGCTCA
AAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAGCAGCAGCAGCAGCAGCAACAT
CCGTCAAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATCATG
CCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGCCGC
CGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGTGCCTGCC
GGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGCAACCGA
GCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGCAACAGCATGGTCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_999#0      ---------------------------CCGAACGGTAATGGTGTGGGAGGTCGTCACGCA 33
consensus_999#1      CCGGGAGCAGCTGTAGGTGGCTCCATTGGCAATGGTAACAGTGTGGGAGGTCGTCACGCA 60
                                                   ** *****  ********************

consensus_999#0      GGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCAC 93
consensus_999#1      GGTGGCTCGATCGGTTACGGCATAGGAGCTGGAGGGAATCGGCGAAAGTATCACACTCAC 120
                     ************************************************************

consensus_999#0      CGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACCGCCGCACACTAC 153
consensus_999#1      CGTGATCACCTTCAATCTGGCGTTGGTGTTGGAGGCAGTACTGGTACGGCCGCGCACTAC 180
                     *********************************************** ***** ******

consensus_999#0      CCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGTGCCTGGCGCGAGCTCA 213
consensus_999#1      CCAGGAGAGTACGACAGTGGGATGCATCTGCCCGGTGGTATTGCGCCTGGGGCGAGCTCA 240
                     ******************************************* ****** *********

consensus_999#0      AAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAACAGCAGCATCAGCAGCAGCAG 273
consensus_999#1      AAGAAAAAGAATAAAAATTGGAAAAGAAAACATCACCAGCAGCAGCA---GCAGCAGCAA 297
                     ************************************** ********   ********* 

consensus_999#0      CATCCGTCGAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATC 333
consensus_999#1      CATCCGTCAAACCGTCGGCAGTATGGAGATCCAGCAGGATCGGCAGCGGAAAGTGATATC 357
                     ******** ***************************************************

consensus_999#0      ATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGC 393
consensus_999#1      ATGCCGGATTTGCTTCTACCCACCGGTACCGGGAGTGCCGCGAAGCGAAACCGTACCAGC 417
                     ************************************************************

consensus_999#0      CGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGAGCCT 453
consensus_999#1      CGCCGACCGGTTTGGCGAACGATCTACACCGAATGAGAGATTTAGGGGCAGCCCGTGCCT 477
                     ******************************************************* ****

consensus_999#0      GCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGG-AAC 512
consensus_999#1      GCCGGCTGATGTAATTAACGTGTGCAATCTTTAACTTGATATTTAAAGCGGCACGGCAAC 537
                     ******************************************************** ***

consensus_999#0      CGAGCGCTGCGCTGATCTATACTTTCAAACAGTAGCAGGAGCAGTAGCAGCAGCAGCATG 572
consensus_999#1      CGAGCGCTGCGCTGATCTATACTTTCAAACAG------------TAGCAGCAACAGCATG 585
                     ********************************            ******** *******

consensus_999#0      GTCGTGATATACCCAGCGATCGCCATTCCCACAGCGCGAACC 614
consensus_999#1      GTCGTG------------------------------------ 591
                     ******