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Apis mellifera
cluster # 1019 cluster # 1019       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1019#0 length = 477 sequences # 1  
consensus_1019#1 length = 334 sequences # 1  
consensus_1019#2 length = 258 sequences # 1  

consensusID : consensus_1019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence
                              [GCAAGAGTATCGAGAACGTTGCATACAATTAAGGAACAATCACACAGTGTACCGCTTCAACGAGCCGCACGAAGCGAAACACGGATCGAGGGGGAGGGAAGGAGTAAGGAATAAGGCGGGAGAAAGAGAGAGAGAGAGAGAGAGAAGGGAGGGAGAAGAGGAATTCTTGGCTGGTTCGAGTCGAACAACGTGTAGCGGATCTTCTACGCAGGTATACAAGTAAGTACGTACGTGCGGGTCGCGTGTAGGGATACTCACGTAATGTAGGCCCGTTCCAGGAGATACCGTAAGACCTTGCTGTTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAGACGAGAAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTCTTCGAAATTTGTAAATAATCAGGGCACAAGGGTCGAAAATGATTATCCAGCTGTTCCATGCTGA]

[+] EMBL BI512058             [GCAAGAGTATCGAGAACGTTGCATACAATTAAGGAACAATCACACAGTGTACCGCTTCAACGAGCCGCACGAAGCGAAACACGGATCGAGGGGGAGGGAAGGAGTAAGGAATAAGGCGGGAGAAAGAGAGAGAGAGAGAGAGAGAAGGGAGGGAGAAGAGGAATTCTTGGCTGGTTCGAGTCGAACAACGTGTAGCGGATCTTCTACGCAGGTATACAAGTAAGTACGTACGTGCGGGTCGCGTGTAGGGATACTCACGTAATGTAGGCCCGTTCCAGGAGATACCGTAAGACCTTGCTGTTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAGACGAGAAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTCTTCGAAATTTGTAAATAATCAGGGCACAAGGGTCGAAAATGATTATCCAGCTGTTCCATGCTGA]


>consensus_1019#0 GCAAGAGTATCGAGAACGTTGCATACAATTAAGGAACAATCACACAGTGTACCGCTTCAA CGAGCCGCACGAAGCGAAACACGGATCGAGGGGGAGGGAAGGAGTAAGGAATAAGGCGGG AGAAAGAGAGAGAGAGAGAGAGAGAAGGGAGGGAGAAGAGGAATTCTTGGCTGGTTCGAG TCGAACAACGTGTAGCGGATCTTCTACGCAGGTATACAAGTAAGTACGTACGTGCGGGTC GCGTGTAGGGATACTCACGTAATGTAGGCCCGTTCCAGGAGATACCGTAAGACCTTGCTG TTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAGACGAG AAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTCTTCGAAA TTTGTAAATAATCAGGGCACAAGGGTCGAAAATGATTATCCAGCTGTTCCATGCTGA



consensusID : consensus_1019#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence
                              [TTTTTTTTTTTGAATACTATTCTGTTTTCGAAATTTGATTGAATTGCAAAAATTTATAAATGCAACGCTCCTTTAATCTTTCCCCCTTTCGGTAATTTTTTTTCCTCTTTTAATCAATCCTTCCCTTTCCTAAATTTCAAAATAGTTGAAACAGTTTGGAAAAAATATAATTTTAAAATTCTCCTTTTAAGCTGAAAATTTGTTTAACGCCAATTTAAGTGGAGTTGGAGCTTTTTTAATATAAAATAATTGCAATTAACGGAACAGTGGTTCCAACCATTTTCAGAATCAGGGCACAAGGGTCGAAAATGATTATCCAGCTGTTCCATGCTGA]

[+] EMBL BI508756             [TTTTTTTTTTTGAATACTATTCTGTTTTCGAAATTTGATTGAATTGCAAAAATTTATAAATGCAACGCTCCTTTAATCTTTCCCCCTTTCGGTAATTTTTTTTCCTCTTTTAATCAATCCTTCCCTTTCCTAAATTTCAAAATAGTTGAAACAGTTTGGAAAAAATATAATTTTAAAATTCTCCTTTTAAGCTGAAAATTTGTTTAACGCCAATTTAAGTGGAGTTGGAGCTTTTTTAATATAAAATAATTGCAATTAACGGAACAGTGGTTCCAACCATTTTCAGAATCAGGGCACAAGGGTCGAAAATGATTATCCAGCTGTTCCATGCTGA]


>consensus_1019#1 TTTTTTTTTTTGAATACTATTCTGTTTTCGAAATTTGATTGAATTGCAAAAATTTATAAA TGCAACGCTCCTTTAATCTTTCCCCCTTTCGGTAATTTTTTTTCCTCTTTTAATCAATCC TTCCCTTTCCTAAATTTCAAAATAGTTGAAACAGTTTGGAAAAAATATAATTTTAAAATT CTCCTTTTAAGCTGAAAATTTGTTTAACGCCAATTTAAGTGGAGTTGGAGCTTTTTTAAT ATAAAATAATTGCAATTAACGGAACAGTGGTTCCAACCATTTTCAGAATCAGGGCACAAG GGTCGAAAATGATTATCCAGCTGTTCCATGCTGA



consensusID : consensus_1019#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence
                              [TGCTGTTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAGACGAGAAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTCTTCGAAATTTGTAAATGTATAATTTCTTTCTTAATCTTTCTTTTTTCTTTCCTCTTCAGTTTCTTATTTTTGTTACGTAAATTTGAAATTTGAAATTAGATTCATTTTTTATCTTTCGAGACTGTTTAACTTTCTCGAAA]

[+] EMBL BI513525             [TGCTGTTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAGACGAGAAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTCTTCGAAATTTGTAAATGTATAATTTCTTTCTTAATCTTTCTTTTTTCTTTCCTCTTCAGTTTCTTATTTTTGTTACGTAAATTTGAAATTTGAAATTAGATTCATTTTTTATCTTTCGAGACTGTTTAACTTTCTCGAAA]


>consensus_1019#2 TGCTGTTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAG ACGAGAAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTCTT CGAAATTTGTAAATGTATAATTTCTTTCTTAATCTTTCTTTTTTCTTTCCTCTTCAGTTT CTTATTTTTGTTACGTAAATTTGAAATTTGAAATTAGATTCATTTTTTATCTTTCGAGAC TGTTTAACTTTCTCGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1019#0      GCAAGAGTATCGAGAACGTTGCATACAATTAAGGAACAATCACACAGTGTACCGCTTCAA 60
consensus_1019#2      ------------------------------------------------------------
consensus_1019#1      ------------------------------------------------------------
                                                                                  

consensus_1019#0      CGAGCCGCACGAAGCGAAACACGGATCGAGGGGGAGGGAAGGAGTAAGGAATAAGGCGGG 120
consensus_1019#2      ------------------------------------------------------------
consensus_1019#1      ------------------------------------------------------------
                                                                                  

consensus_1019#0      AGAAAGAGAGAGAGAGAGAGAGAGAAGGGAGGGAGAAGAGGAATTCTTGGCTGGTTCGAG 180
consensus_1019#2      ------------------------------------------------------------
consensus_1019#1      ------------------------------------------------------------
                                                                                  

consensus_1019#0      TCGAACAACGTGTAGCGGATCTTCTACGCAGGTATACAAGTAAGTACGTACGTGCGGGTC 240
consensus_1019#2      ------------------------------------------------------------
consensus_1019#1      ------TTTTTTTTTTTGAATACTATTCTGTTTTCGAAATTTGATTGAATTGCAAAAATT 54
                                                                                  

consensus_1019#0      GCGTGTAGGGATACTCACGTAATGTAGGCCCGTTCCAGGAGATACCGTAAGACCTTGCTG 300
consensus_1019#2      -------------------------------------------------------TGCTG 5
consensus_1019#1      TATAAATGCAACGCTCCTTTAATCTTTCCCCCTTTCGGTAATTTTTTTTC--CTCTTTTA 112
                                                                             *  * 

consensus_1019#0      TTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAGACGAG 360
consensus_1019#2      TTACGTCACTAGAAGCCACGTGATTAGGAGAAAAAGGATACCGGCGAGAAGGGAGACGAG 65
consensus_1019#1      ATCAATC-CTTCCCTTTCCTAAATTTCAAAATAGTTGAAACAGTTTGGAAAAAATAT--- 168
                       *   ** **        *   ***   * * *   ** ** *    ***   * *    

consensus_1019#0      AAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTC----TTC 416
consensus_1019#2      AAAACGGAAACTCTGCCCTCGGGCTGAAGAACACGCTTCGTGCCGCTCCGTTC----TTC 121
consensus_1019#1      AATTTTAAAATTCTCCTTTTAAGCTGAA-AATTTGTTTAACGCCAATTTAAGTGGAGTTG 227
                      **     *** *** *  *   ****** **   * **   ***  *          ** 

consensus_1019#0      GAAATTTGTAAAT----AATCAGGGCACAAGGGTCGAAAATGATTATCCAGCT--GTTCC 470
consensus_1019#2      GAAATTTGTAAATGTATAATTTCTTTCTTAATCTTTCTTTTTTCTTTCCTCTTCAGTTTC 181
consensus_1019#1      GAGCTTTTTTAAT--ATAAAATAATTGCAATTAACGGAACAGTGGTTCCAACC-ATTTTC 284
                      **  *** * ***    **          *                ***       ** *

consensus_1019#0      ATGCTGA----------------------------------------------------- 477
consensus_1019#2      TTATTTTTGTTACGTAAATTTGAAATTTGAAATTAGATTCATTTTTTATCTTTCGAGACT 241
consensus_1019#1      AGAATCAGGGCACAAGGGTCGAAAATGATTATCCAGCTGTTCCATGCTGA---------- 334
                          *                                                       

consensus_1019#0      -----------------
consensus_1019#2      GTTTAACTTTCTCGAAA 258
consensus_1019#1      -----------------
                                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)