These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [TGAAGAACTGAAATACATTTGGGCCGAATGGAGAAATGCTAGTGGTAAAAAAGTGAAATTTTTGTTCATGAGATACGTTGAATTAAGTAACATGGCTGCCAGGTTAAATAATTATTCCGATAACGCGGCTTATTGGCTGAAAGATTACGAGGCTGATGATTTCCCTGAACAAATCGAGACACTCTGGCAACAATTGAAACCACTTTATTTACAATTGCACGCTTATGTTCGTCGCGAACTTCGAAAAAAGTACGGTGAAAATATTGTTTCGAAAGACGGTCCCATCCCGGCACATTTGTTAGGTAATATGTGGGCGCAAACTTGGAGCAACATCGCAAATTTTACTACTCCGTATCCAGGAAAACAAATGCCAGACGTCACCGATGCTATGATAAATCAAGGATACAATGCGACAACTATTTTCCGTGTTGCCGAAGATTTTTTCACTTCGATCAATCTCACCGCAATGCCGGATCTTTTCTGGGAACGATCAATATTAGAAAAGCCAAAGGATCGCGAACTAATCTGTCACGCTAGCGCCTGGGATTTCTACGATGGCAAAGACTTTAGAATTAAACAGTGCACTGAAGTCACGATGGAACACTTGTTAACCGCACATCACGAAATGGGTCACGTGGAATATTATCTACAATATAAAAATCAAC] [+] EMBL BI509028 [TGAAGAACTGAAATACATTTGGGCCGAATGGAGAAATGCTAGTGGTAAAAAAGTGAAATTTTTGTTCATGAGATACGTTGAATTAAGTAACATGGCTGCCAGGTTAAATAATTATTCCGATAACGCGGCTTATTGGCTGAAAGATTACGAGGCTGATGATTTCCCTGAACAAATCGAGACACTCTGGCAACAATTGAAACCACTTTATTTACAATTGCACGCTTATGTTCGTCGCGAACTTCGAAAAAAGTACGGTGAAAATATTGTTTCGAAAGACGGTCCCATCCCGGCACATTTGTTAGGTAATATGTGGGCGCAAACTTGGAGCAACATCGCAAATTTTACTACTCCGTATCCAGGAAAACAAATGCCAGACGTCACCGATGCTATGATAAATCAAGGATACAATGCGACAACTATTTTCCGTGTTGCCGAAGATTTTTTCACTTCGATCAATCTCACCGCAATGCCGGATCTTTTCTGGGAACGATCAATATTAGAAAAGCCAAAGGATCGCGAACTAATCTGTCACGCTAGCGCCTGGGATTTCTACGATGGCAAAGACTTTAGAATTAAACAGTGCACTGAAGTCACGATGGAACACTTGTTAACCGCACATCACGAAATGGGTCACGTGGAATATTATCTACAATATAAAAATCAAC] consensusID : consensus_1027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [AATCACACCAGATGTTTACAATTGTTTCTGGTGGGATATCGCTGAAGCTTTTCAAGGTATTGAGCCACCAATAACTCGATCAGAAAATGACTTCGATCCTGGTGCGAAATATCATATAATAGCAAATGTGGAGTACATTAGATATTATGTCAGTTTTATAATACAATTCCAATTTCACAAAGCTCTTTGTATAGAAGCAAAACAATACGATCCGCAGAATTCAAATTCAAAACCATTACATAAATGTGATATTTATAATAATACAGCAGCAGGAAACTTGTTAAAATCAATGTTGGAATTGGGTTTTTCTAAACCTTGGCAAGATGCAATGGAAAAAATCACTGGTCAAAGGAATATGGATACTGCTGGATTATTGGAATATTTCAAACCATTGACAGATTGGCTTACAGAGGAAAATAAAAAAACTAACGAATATATTGGATGGAAATCTAAATCAAAAGGATGCACATGAATTTTGGTCTAACAGTCACTAGAAAAAAAATGAATAAATAAAAATATATGATATAATAAATGAATAAAGTATGAATAAAACGAATAAATTTTTTTTGAATTATTATTTTAAAAAAAAATATTTGTCCATCTTTACGCAATAGATGTATTAACGAATGATTTACGA] [+] EMBL BI509998 [AATCACACCAGATGTTTACAATTGTTTCTGGTGGGATATCGCTGAAGCTTTTCAAGGTATTGAGCCACCAATAACTCGATCAGAAAATGACTTCGATCCTGGTGCGAAATATCATATAATAGCAAATGTGGAGTACATTAGATATTATGTCAGTTTTATAATACAATTCCAATTTCACAAAGCTCTTTGTATAGAAGCAAAACAATACGATCCGCAGAATTCAAATTCAAAACCATTACATAAATGTGATATTTATAATAATACAGCAGCAGGAAACTTGTTAAAATCAATGTTGGAATTGGGTTTTTCTAAACCTTGGCAAGATGCAATGGAAAAAATCACTGGTCAAAGGAATATGGATACTGCTGGATTATTGGAATATTTCAAACCATTGACAGATTGGCTTACAGAGGAAAATAAAAAAACTAACGAATATATTGGATGGAAATCTAAATCAAAAGGATGCACATGAATTTTGGTCTAACAGTCACTAGAAAAAAAATGAATAAATAAAAATATATGATATAATAAATGAATAAAGTATGAATAAAACGAATAAATTTTTTTTGAATTATTATTTTAAAAAAAAATATTTGTCCATCTTTACGCAATAGATGTATTAACGAATGATTTACGA] consensusID : consensus_1027#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [AGGGAACGGTATTCGCCTAGACTCGTGAAAGTTGCTCCTTGACCGATTGTGGTAGTTGGTCAACTGTTTTATTAATTCGTCGAACTTCAGCGTCGAACATCGAAAGGAAATGTTACGCTCACTGTTGGTGGCGTTATTTATATCATTAATATGGGGATTTCTACGATGGCAAAGACTTTAGAATTAAACAGTGCACTGAAGTCACGATGGAACACTTGTTAACCGCACATCACGAAATGGGTCACGTGGAATATTATCTACAATATAAAAATCAACCCACTTTTTTCAAAGAAGGCGCGAATCCTGGATTCCATGAAGCAGTTGGTGACGTTATAGCACTTAGCGCATCTACACCGAGCCACTTAAAAACCATTAAATTATTGGATGATGATTCGACTGATGTGGAAGCTAATATTAATCATCTTTATTTGAAAGGCCTTGATAAAATCGTCTTCTTACCATTTGCATATGCGATGGAAAAATGGCGCTGGAGCGTATTTCGTGGAGAAATCACGCCAGATGTTTACAATTGTTTCTGGTGGGATAT] [+] EMBL BI504652 [AGGGAACGGTATTCGCCTAGACTCGTGAAAGTTGCTCCTTGACCGATTGTGGTAGTTGGTCAACTGTTTTATTAATTCGTCGAACTTCAGCGTCGAACATCGAAAGGAAATGTTACGCTCACTGTTGGTGGCGTTATTTATATCATTAATATGGGGATTTCTACGATGGCAAAGACTTTAGAATTAAACAGTGCACTGAAGTCACGATGGAACACTTGTTAACCGCACATCACGAAATGGGTCACGTGGAATATTATCTACAATATAAAAATCAACCCACTTTTTTCAAAGAAGGCGCGAATCCTGGATTCCATGAAGCAGTTGGTGACGTTATAGCACTTAGCGCATCTACACCGAGCCACTTAAAAACCATTAAATTATTGGATGATGATTCGACTGATGTGGAAGCTAATATTAATCATCTTTATTTGAAAGGCCTTGATAAAATCGTCTTCTTACCATTTGCATATGCGATGGAAAAATGGCGCTGGAGCGTATTTCGTGGAGAAATCACGCCAGATGTTTACAATTGTTTCTGGTGGGATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1027#0 ---TGAAGAACTGAAATACATTTGGGCCGAATGGAGAAATGCTA---GTGGTAAAAAAGT 54 consensus_1027#2 -----AGGGAACGGTATTCGCCTAGACTCGT--GAAAGTTGCTC---CT--TGACCGATT 48 consensus_1027#1 AATCACACCAGATGTTTACAATTGTTTCTGGTGGGATATCGCTGAAGCTTTTCAAGGTAT 60 * * * * * *** * * * * consensus_1027#0 GAAATTTTTGTTCATGAGATACGTTGAATTAAGTAACATGGCTGCCAGGTT----A---- 106 consensus_1027#2 GTGGTAGTTGGTCAACTGTTTTATTAATTCGTCGAACTTCAGCGTCGAACATCGAA---- 104 consensus_1027#1 TGAGCCACCAATAACTCGATCAGAAAATGACTTCGATCCTGGTGCGAAATATCATATAAT 120 * * * * * * * * consensus_1027#0 AATAATTATTCCGATAACGCGGCTTATTGGCTGAAAGATTACGAGGCTGATGATTTCCCT 166 consensus_1027#2 AGGAAATGTTACGCTCACTGTTGGTGGCGTTATTTATATCATTAATATGGGGATTTCT-- 162 consensus_1027#1 AGCAAATGTGGAGTACATTAGATATTATGTCAGTTTTATAAT-ACAATTCCAATTTCACA 179 * ** * * * * * * ** * * * ***** consensus_1027#0 GAACAAATCGAGACACTCTGGCAACAATTGAAACCACTTTATTTACAAT-TGCACGCTTA 225 consensus_1027#2 --ACGATGGCAAAGACTTTAGAATTAAAC-AGTGCACTGAAGTCACGAT-GGAACACT-- 216 consensus_1027#1 AAGCTCTTTGTATAGAAGCAAAACAATAC-GATCCGCAGAATTCAAATTCAAAACCATTA 238 * * * * * * * * * ** * consensus_1027#0 TGTTCGTCGCGAACTTCGAAAAAAGTACGGTGAAAATATTGTTTCGAAAGACGGTCCCAT 285 consensus_1027#2 TGTTAACCGCACATCACGAAATGGGTCACGTGGAA-TATTATCTACAATATAAAAATCAA 275 consensus_1027#1 CATAAATGTGATATTTATAATAATACAGCAGCAGGAAACTTGTTAAAATCAATGTTGGAA 298 * * ** * * * ** * consensus_1027#0 CCCGGCACATTTGTTAGGTAATATGTGGGCGCAAACTTGGAGCAACATCGCAAATTTTAC 345 consensus_1027#2 CC---CACTTTTTTCAAAGAA------GGCGCGAATCCTGGATTCCATGAAGCAGTTGGT 326 consensus_1027#1 TT---GGGTTTTTCTAAACCTTGGCAAGATGCAATGGAAAAAATCACTGGTCAAAGGAAT 355 *** * * ** * * * consensus_1027#0 TACTCCGTATC-CAGGAAAACAAATGCCAGACGTCACCGATGCTATGATAAATCAAGGAT 404 consensus_1027#2 GACGTTATAGC-ACTTAGCGCATCTACACCGAGCCACTTAAAAACCATTAAATTATTGG- 384 consensus_1027#1 ATGGATACTGCTGGATTATTGGAATATTTCAAACCATTGACAGATTGGCTTACAGAGGA- 414 * * ** * * * consensus_1027#0 ACAATGCGACAACTATTTTCCGTGTTG-CCGAAGATTTTTTCACTTCGATCAATCTCACC 463 consensus_1027#2 ATGATGATTCGACTGATGTGGAAGCTA-ATATTAATCATCTTTATTTGAAAGGCCTTG-- 441 consensus_1027#1 -AAATAAAAAAACTAACGAATATATTGGATGGAAATCTAAATCAAAAGGATGCACATGAA 473 ** *** * ** * * consensus_1027#0 GCAATGCCGGATCTTTTCTGGGAACG--ATCAATATTAGAAAAGCCAAAGGATCGCG--- 518 consensus_1027#2 ATAAAATCGTCTTCTTACCATTTGC---ATATGCGATGGAAAA---ATGGCGCTGGA--- 492 consensus_1027#1 TTTTGGTCTAACAGTCACTAGAAAAAAAATGAATAAATAAAAATATATGATATAATAAAT 533 * * * ** **** * consensus_1027#0 AACTAATCTGTCACGCTAGCGCCTGGGATTTCTACGATGGCAAAGACTTTAGAATTAAAC 578 consensus_1027#2 GCGTATTTCGTGGAGAAATCACGCCAGATGTTTACAATTGTTTCTGGTGGGATAT----- 547 consensus_1027#1 GAATAAAGTATGAATAAAACGAATAAATTTTTTTTGAATTATTATTTTAAAAAAAAATAT 593 ** * * * * * * * * * consensus_1027#0 AGTGCACTGAAGTCACGATGGAACACTTGTTAACCGCACATCACGAAATGGGTCACGTGG 638 consensus_1027#2 ------------------------------------------------------------ consensus_1027#1 TTGTCCATCTTTACGCAATAGATGTATTAACGAATGATTTACGA---------------- 637 consensus_1027#0 AATATTATCTACAATATAAAAATCAAC 665 consensus_1027#2 --------------------------- consensus_1027#1 --------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |