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Apis mellifera
cluster # 1042 cluster # 1042       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1042#0 length = 555 sequences # 2  
consensus_1042#1 length = 475 sequences # 1  

consensusID : consensus_1042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 555
fasta sequence
                              [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA]

[+] EMBL BI515803             [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA]
[+] EMBL BI510354             [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACA                                 ]


>consensus_1042#0 TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATA ATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTA TTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATA CTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAA AACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTC AATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGC CTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCG CCGTGGAGGATGCCGCTTCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCA AGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTA CCCCTCCTCCAACGA



consensusID : consensus_1042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACAACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA]

[+] EMBL BI505852             [GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACAACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA]


>consensus_1042#1 GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTC ATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACA GCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTG GTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGGAAGGTG AGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGA AGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGG CCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACAACCA AAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1042#0      -------------------------------------------TTTTAAATTTTTTTCTC 17
consensus_1042#1      GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTC 60
                                                                 *****************

consensus_1042#0      ATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACA 77
consensus_1042#1      ATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACA 120
                      ************************************************************

consensus_1042#0      GCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTG 137
consensus_1042#1      GCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTG 180
                      ************************************************************

consensus_1042#0      GTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATT 197
consensus_1042#1      GTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACG------- 233
                      *****************************************************       

consensus_1042#0      GCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATT 257
consensus_1042#1      ------------------------------------------------------------
                                                                                  

consensus_1042#0      TGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCA 317
consensus_1042#1      ------------------------------------------------------------
                                                                                  

consensus_1042#0      ATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAA 377
consensus_1042#1      ---------------------------------------------------------GAA 236
                                                                               ***

consensus_1042#0      GGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCT 437
consensus_1042#1      GGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCT 296
                      ************************************************************

consensus_1042#0      TCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTG 497
consensus_1042#1      TCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTG 356
                      ****  ******************************************************

consensus_1042#0      CAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA-- 555
consensus_1042#1      CAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACA 416
                      **********************************************************  

consensus_1042#0      -----------------------------------------------------------
consensus_1042#1      ACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA 475
                                                                                 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)