These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 555 fasta sequence [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA] [+] EMBL BI515803 [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA] [+] EMBL BI510354 [TTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATTGCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATTTGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCAATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACA ] consensusID : consensus_1042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACAACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA] [+] EMBL BI505852 [GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTCATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACAGCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTGGTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGGAAGGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCTTCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTGCAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACAACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1042#0 -------------------------------------------TTTTAAATTTTTTTCTC 17 consensus_1042#1 GGGCCGTCATGGACGCCCGAATTTTATTCGTAAAATAATTTTTTTTTAAATTTTTTTCTC 60 ***************** consensus_1042#0 ATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACA 77 consensus_1042#1 ATTTTATTGAGATAAATGTAATAGATTTTACAAAAATATGATAATTCCAAAAAATTGACA 120 ************************************************************ consensus_1042#0 GCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTG 137 consensus_1042#1 GCTATGTGACACAAGTAAAAACATGTCAGTAAGACAGAATTTATTCAGTGTGTTCTTTTG 180 ************************************************************ consensus_1042#0 GTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACGAGGGATT 197 consensus_1042#1 GTGATCATTTGTGGTTTCCTTATTGGAAACCAAAAATTTTATACTACGTCACG------- 233 ***************************************************** consensus_1042#0 GCATTTGCGGAAGCAAGACGAAATTCCGCTAAACGTATTTTAAAACCTCAAAATTCAATT 257 consensus_1042#1 ------------------------------------------------------------ consensus_1042#0 TGTGAAAAGGATAACGCTGAATTCACTTACGATGGAGTCTTTCAATATAATTTTGGATCA 317 consensus_1042#1 ------------------------------------------------------------ consensus_1042#0 ATGGCAAATTCGTATTCTCAATCAGTCGGTGGATATAGTCCGCCTTCTCTTTCTCTCGAA 377 consensus_1042#1 ---------------------------------------------------------GAA 236 *** consensus_1042#0 GGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCT 437 consensus_1042#1 GGTGAGGCGATATCTTTCGTCGCCACAGCGTCCAAGCTGGCCGCCGTGGAGGATGCCGCT 296 ************************************************************ consensus_1042#0 TCGANNGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTG 497 consensus_1042#1 TCGAAGGGGCCCGAGGCTTCGATTCGTTCGAAAGTCTCGCCCAAGGCAAGGGCCGCCTTG 356 **** ****************************************************** consensus_1042#0 CAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGA-- 555 consensus_1042#1 CAGGCCCTTCGGTCGCCGAGAAACAGAATATCAACACCTCTTACCCCTCCTCCAACGACA 416 ********************************************************** consensus_1042#0 ----------------------------------------------------------- consensus_1042#1 ACCAAAGACGTCGAGACCATCACAGAGGTCTGCAGTGGAGGTGAATTACCAGAAGTTGA 475 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |