These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAATAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTATTT] [+] EMBL BI505490 [GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAATAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTATTT] consensusID : consensus_1072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence [GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTT] [+] EMBL BI511360 [GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACT TTAAAGCGTTCACGAACTATT AAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCG ] [+] EMBL BI502839 [ GAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1072#0 -----GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAA 55 consensus_1072#1 GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAA 60 ******************************************************* consensus_1072#0 CGCGACGGGATTTTCGAATTAATAAAAGTTAGCGAT-----------GATAATTAATTGG 104 consensus_1072#1 CGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGG 120 ************************************ ************* consensus_1072#0 AAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTG 164 consensus_1072#1 AAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTG 180 ************************************************************ consensus_1072#0 ATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAA 224 consensus_1072#1 ATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAA 240 ************************************************************ consensus_1072#0 AACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTG 284 consensus_1072#1 AACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTG 300 ************************************************************ consensus_1072#0 CATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCG 344 consensus_1072#1 CATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCG 360 ************************************************************ consensus_1072#0 AATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCT 404 consensus_1072#1 AATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCT 420 ************************************************************ consensus_1072#0 CGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAA 464 consensus_1072#1 CGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAA 480 ************************************************************ consensus_1072#0 ATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAA 524 consensus_1072#1 ATTATTGAAGATTCAACGTTT--------------------------------------- 501 ********************* consensus_1072#0 TAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTAT 584 consensus_1072#1 ------------------------------------------------------------ consensus_1072#0 TT 586 consensus_1072#1 -- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |