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Apis mellifera
cluster # 1072 cluster # 1072       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1072#0 length = 586 sequences # 1  
consensus_1072#1 length = 501 sequences # 2  

consensusID : consensus_1072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAATAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTATTT]

[+] EMBL BI505490             [GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAATAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTATTT]


>consensus_1072#0 GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGA CGGGATTTTCGAATTAATAAAAGTTAGCGATGATAATTAATTGGAAACAGTTGATCATAT CCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCG CGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGT AAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAA ATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTT TAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGA AGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAA CGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAATAAAAGAATAAAGTCG ATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTATTT



consensusID : consensus_1072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 501
fasta sequence
                              [GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTT]

[+] EMBL BI511360             [GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACT  TTAAAGCGTTCACGAACTATT  AAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCG                                                                                                                                        ]
[+] EMBL BI502839             [            GAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTT]


>consensus_1072#1 GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAA CGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGG AAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTG ATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAA AACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTG CATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCG AATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCT CGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAA ATTATTGAAGATTCAACGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1072#0      -----GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAA 55
consensus_1072#1      GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAA 60
                           *******************************************************

consensus_1072#0      CGCGACGGGATTTTCGAATTAATAAAAGTTAGCGAT-----------GATAATTAATTGG 104
consensus_1072#1      CGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGG 120
                      ************************************           *************

consensus_1072#0      AAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTG 164
consensus_1072#1      AAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTG 180
                      ************************************************************

consensus_1072#0      ATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAA 224
consensus_1072#1      ATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAA 240
                      ************************************************************

consensus_1072#0      AACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTG 284
consensus_1072#1      AACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTG 300
                      ************************************************************

consensus_1072#0      CATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCG 344
consensus_1072#1      CATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCG 360
                      ************************************************************

consensus_1072#0      AATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCT 404
consensus_1072#1      AATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCT 420
                      ************************************************************

consensus_1072#0      CGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAA 464
consensus_1072#1      CGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAA 480
                      ************************************************************

consensus_1072#0      ATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAA 524
consensus_1072#1      ATTATTGAAGATTCAACGTTT--------------------------------------- 501
                      *********************                                       

consensus_1072#0      TAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTAT 584
consensus_1072#1      ------------------------------------------------------------
                                                                                  

consensus_1072#0      TT 586
consensus_1072#1      --
                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)