These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [CACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTTCGTTTTTCGTCCGTTTTTAGCTTTAAACCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGT] [+] EMBL BI506738 [CACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTTCGTTTTTCGTCCGTTTTTAGCTTTAAACCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGT] consensusID : consensus_1107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [GATTGGACACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTCCGGAGAGGAGGATGATGAAAAGGTGTATATAAAAAAAAAA] [+] EMBL BI506811 [GATTGGACACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGAAGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGATTGGTTCGATCGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAGACAGGAGTTAAATCGGCCTTAAATACGATTGGTCGCATAGATACCAAACCCCCTCCACTCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTCAGCGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAAGTAATCGTCGTCCCTTTCCGGAGAGGAGGATGATGAAAAGGTGTATATAAAAAAAAAA] consensusID : consensus_1107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGTGTGTAGCGATATACTCGCGATTAGGAATTGAAGAATCAAATTACAATATTTACTTTCGAACAAGTACCATCGAATAAGTTTTCCGGGCCACGATATTAGAATTATATACCTTATATAAACTTGCAACAAACAGTGCACGTATCACCGATCATCTCGTTGGTATATGCATATACGTATAGTGTGTATGTTTTGGCCTAAAAAAAAGAGTAAGAGAAAGAGGATTTTTCTCTTTCGTTCACGTGTTATACATTACACCTGGTGACTTTGTTAATTTTTCGTTTTGTTTACGAAAGTAAGGTTC] [+] EMBL BI510064 [CCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGTGTGTAGCGATATACTCGCGATTAGGAATTGAAGAATCAAATTACAATATTTACTTTCGAACAAGTACCATCGAATAAGTTTTCCGGGCCACGATATTAGAATTATATACCTTATATAAACTTGCAACAAACAGTGCACGTATCACCGATCATCTCGTTGGTATATGCATATACGTATAGTGTGTATGTTTTGGCCTAAAAAAAAGAGTAAGAGAAAGAGGATTTTTCTCTTTCGTTCACGTGTTATACATTACACCTGGTGACTTTGTTAATTTTTCGTTTTGTTTACGAAAGTAAGGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1107#0 -------CACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGA 53 consensus_1107#1 GATTGGACACCCTCCTCCGAACAACTTGATTGTTTCGCATTTCGAAAATTTAGAAGAAGA 60 consensus_1107#2 -----------CCCCGTTGACTTGTGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCG 49 * ** ** * ** * ** * * * consensus_1107#0 AGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGAT 113 consensus_1107#1 AGAAGAAAAATCGATTCGCGTGCACCGAGTGGTGGTCATCGCTCGATCGACGAATACGAT 120 consensus_1107#2 TGTGTAGCGATATACTCGCGATTAGGAATTGAAGA--ATCAAATTA-CAATATTTACTTT 106 * * ** * ***** * * ** * *** * * * *** * consensus_1107#0 TGGTTCGAT-CGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAG 172 consensus_1107#1 TGGTTCGAT-CGATCGAACAGTCAATTCTCTGTCTCGGTGTCGGTTACGATGTAAAGGAG 179 consensus_1107#2 CGAACAAGTACCATCGAATAAGTT-TTCCGGGCCACGATATTAGA-ATTATATACCTTAT 164 * * * ****** * *** * * ** * * * * ** ** * consensus_1107#0 ACAGGAGTTAAATCGGCCTTAAA--TACGATTGGTCGCATAGATACCAAACCCCCTCCAC 230 consensus_1107#1 ACAGGAGTTAAATCGGCCTTAAA--TACGATTGGTCGCATAGATACCAAACCCCCTCCAC 237 consensus_1107#2 ATAAACTTGCAACAAACAGTGCACGTATCACCGATCATCTCGTTGGTATATGCA-TATAC 223 * * * ** * * * ** * * ** * * * * * * * ** consensus_1107#0 TCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTC 290 consensus_1107#1 TCCCCTTCCCCCTCCCCCGTCCCCGCACCGAGACGCGAGATCGTCGCGAACTGTCCCTTC 297 consensus_1107#2 GTATAGTGTGTATGTTTTGGCCTAAAAAAAAGA-GTAAGAGAAAGAGGATTTTTCTCTTT 282 * * * ** * *** * *** ** * ** *** consensus_1107#0 AG--CGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAA 348 consensus_1107#1 AG--CGCGCATCACTTTTTTAAAATACACCTTTTCATCATCCTCCTCTCCGGAAAGGAAA 355 consensus_1107#2 CGTTCACGTGTTATACATTACACCTGGTGACTTTGTTAATTTTTCGTTTTGTTTACGAAA 342 * * ** * * ** * * *** * ** * * * * * **** consensus_1107#0 GTAATCGTCGTCCCTTTTCGTTTTTC--GTCCGTTTTTAGCTTTAAACCCCGTTGACTTG 406 consensus_1107#1 GTAATCGTCGTCCCTTTCCGGAGAGGAGGATGATGAAAAGGTGTATATAAAAAAAAAA-- 413 consensus_1107#2 GTAAGGTTC--------------------------------------------------- 351 **** ** consensus_1107#0 TGTCGTTAGCATTTTTCTCCGATGCGTGCGCGTTCGT 443 consensus_1107#1 ------------------------------------- consensus_1107#2 ------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |