These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence [AATATTTTTTTAAATAATGCACAACGGATAATAGAATTGACGAAATATTATTAAAAAAAAAACAAAAAAAAAAGAAATATCCATATCGCACTTGAACACTTGAAGAATTATAAGGGCGATTTCACGATGCGAGTAACACGACGACGATAAAATGAGAATGTACGCGCAAGAGATGGCGTTCTTTCCCGTCTTCGAGATACTCGTCGCTAAAATGTTCGGAATAACAACTTTCGTATAGTATTACACTGACTCTGTTTACACGTCTCGTTGTTCGCGTGCTCGATGATTTTTCTTTGCGATAAAGATGAACTTAGNTACTTGAAAGGAGCGCATAGGACAGTGCCTTACACACAATTTATCTAGTTTTACATTTTACATACATACATAGTATTATAACTTTCCAGATGTTTACCACAGTTGAACGCGTATAAGAGAATATAAGAGAACTGAAAGAGTTTTTATTCTTTTCACCTGTGACTTCGTGTAAACATTGTCTCTGTATAAAGAAACGAGAGATCCTCTTCGTTCATATATAACTTTATATATAACCTTACATGCATATACACGACGAGAATGTAATTTTCGATCGATCGATACGGTCCGGAAAGTAATTGTATTTTTTTTTAACCTTTCTTATTCGTTGCTTTACATTTTTTTTTTTATTTCGCGATTTCACGAGTCTCGAAAGTGTCGCGTTACCGTTCAAAAAATTCGAACCTTTTTTTCGTTTCAAGTTTCGCGTGTCGCTTTATC] [+] EMBL BI509069 [AATATTTTTTTAAATAATGCACAACGGATAATAGAATTGACGAAATATTATTAAAAAAAAAACAAAAAAAAAAGAAATATCCATATCGCACTTGAACACTTGAAGAATTATAAGGGCGATTTCACGATGCGAGTAACACGACGACGATAAAATGAGAATGTACGCGCAAGAGATGGCGTTCTTTCCCGTCTTCGAGATACTCGTCGCTAAATTGTTCGGAATAACAACTTTCGTATAGTATTACACTGACTCTGTTTACACGTCTCGTTGTTCGCGTGCTCGATGATTTTTCTTTGCGATAAAGATGAACTTAGNTACTTGAAAGGAGCGCATAGGACAGTGCCTTACACACAATTTATCTAGTTTTACATTTTACATACATACATAGTATTATAACTTTCCAGATGTTTACCACAGTTGAACGCGTATAAGAGAATATAAGAGAACTGAAAGAGTTTTTATTCTTTTCACCTGTGACTTCGTGTAA ] [+] EMBL BI509813 [ ATAAAATGAGAATGTACGCGCAAGAGATGGCGTTCTTTCCCGTCTTCGAGATACTCGTCGCTAAAATGTTCGGAATAACAACTTTCGTATAGTATTACACTGACTCTGTTTACACGTCTCGTTGTTCGCGTGCTCGATGATTTTTCTTTGCGATAAAGATGAACTTAGCTACTTGAAAGGAGCGCATAGGACAGTGCCTTACACACAATTTATCTAGTTTTACATTTTACATACATACATAGTATTATAACTTTCCAGATGTTTACCACAGTTGAACGCGTATAAGAGAATATAAGAGAACTGAAAGAGTTTTTATTCTTTTCACCTGTGACTTCGTGTAAACATTGTCTCTGTATAAAGAAACGAGAGATCCTCTTCGTTCATATATAACTTTATATATAACCTTACATGCATATACACGACGAGAATGTAATTTTCGATCGATCGATACGGTCCGGAAAGTAATTGTATTTTTTTTTAACCTTTCTTATTCGTTGCTTTACATTTTTTTTTTTATTTCGCGATTTCACGAGTCTCGAAAGTGTCGCGTTACCGTTCAAAAAATTCGAACCTTTTTTTCGTTTCAAGTTTCGCGTGTCGCTTTATC] consensusID : consensus_1132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [TTTCGTCAATTCTATTATCCGTTGTGCATTATTTAAAAAAATATTCCAAAAAAGATTAATAATTCGTATGCTTAACTCCATCGATAACCATCGCTCGGTCGTCACGTCGATTATTATCGATCGATCTCGGTAATTTCTTTCTCTCCCCCCTTGAAAGCGATAGTTATCGAAGCATTTTTCGCGCGTAATAGTAATAACCGGTGCGCGTAACACAGATCTCAATGCGGAACGTTACATCGATTGTATAATCGATATATACGATTAAAGGGGAAAGAAACGTGTTAACGATCACTTAAAAAAAAAAAAAAAAAA] [+] EMBL BI506211 [TTTCGTCAATTCTATTATCCGTTGTGCATTATTTAAAAAAATATTCCAAAAAAGATTAATAATTCGTATGCTTAACTCCATCGATAACCATCGCTCGGTCGTCACGTCGATTATTATCGATCGATCTCGGTAATTTCTTTCTCTCCCCCCTTGAAAGCGATAGTTATCGAAGCATTTTTCGCGCGTAATAGTAATAACCGGTGCGCGTAACACAGATCTCAATGCGGAACGTTACATCGATTGTATAATCGATATATACGATTAAAGGGGAAAGAAACGTGTTAACGATCACTTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1132#0 AATATTTTTTTAAATAATGCACAACGGATAATAGAATTGACGAAATATTATTAAAAAAAA 60 consensus_1132#1 -------------------TTTCGTCAATTCTATTATCCGTTGTGCATTATTTAAAAAAA 41 ** ** ** ****** ******* consensus_1132#0 AACAAAAAAAAAAGAAATATCCATATCGCACTTGAACACTTGAAGAATTATAAGGGCGAT 120 consensus_1132#1 TATTCCAAAAAAG-----ATTAATA----ATTCGTATGCTT----AACTCCATCGATAAC 88 * ****** ** *** * * * * *** ** * * * * consensus_1132#0 TTCACGATGCGAGTAACACGACGACGATAAAATGAGAATGTACGCGCAAGAGATGGCGTT 180 consensus_1132#1 --CATCGCTCGGTCGTCACGTCGATTATTATC---GATCGATCTCG---GTAATTTCTTT 140 ** ** **** *** ** * ** * * ** * ** * ** consensus_1132#0 CTTTCCCGTCTTCGAGATACTCGTCGCTAAAATGTT-------CGGAATAACAACTTTCG 233 consensus_1132#1 CTCTCCCCCCTTGAAAGCGATAGTTATCGAAGCATTTTTCGCGCGTAATAGTAATAACCG 200 ** **** *** * * ** ** ** ** **** ** ** consensus_1132#0 TATAGTATTACACTGACTCTGTTT--ACACGTCTCGTTGTTCGCGTGCTCGATGATTTTT 291 consensus_1132#1 GTGCGCGTAACACAGATCTCAATGCGGAACGTTACATCGATTGTATAATCGATATATACG 260 * * **** ** * **** * * * * * * ***** * consensus_1132#0 CTTT---GCGATAAAGATGAACTTA--GNTACTTGAAAGGAGCGCATAGGACAGTGCCTT 346 consensus_1132#1 ATTAAAGGGGAAAGAAACGTGTTAACGATCACTTAAAAAAAAAAAAAAAAAA-------- 312 ** * ** * * * * * * **** *** * * * * consensus_1132#0 ACACACAATTTATCTAGTTTTACATTTTACATACATACATAGTATTATAACTTTCCAGAT 406 consensus_1132#1 ------------------------------------------------------------ consensus_1132#0 GTTTACCACAGTTGAACGCGTATAAGAGAATATAAGAGAACTGAAAGAGTTTTTATTCTT 466 consensus_1132#1 ------------------------------------------------------------ consensus_1132#0 TTCACCTGTGACTTCGTGTAAACATTGTCTCTGTATAAAGAAACGAGAGATCCTCTTCGT 526 consensus_1132#1 ------------------------------------------------------------ consensus_1132#0 TCATATATAACTTTATATATAACCTTACATGCATATACACGACGAGAATGTAATTTTCGA 586 consensus_1132#1 ------------------------------------------------------------ consensus_1132#0 TCGATCGATACGGTCCGGAAAGTAATTGTATTTTTTTTTAACCTTTCTTATTCGTTGCTT 646 consensus_1132#1 ------------------------------------------------------------ consensus_1132#0 TACATTTTTTTTTTTATTTCGCGATTTCACGAGTCTCGAAAGTGTCGCGTTACCGTTCAA 706 consensus_1132#1 ------------------------------------------------------------ consensus_1132#0 AAAATTCGAACCTTTTTTTCGTTTCAAGTTTCGCGTGTCGCTTTATC 753 consensus_1132#1 ----------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |