These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 610 fasta sequence [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAGAATTTCAATTTTGAAACACCAAACTCAACG] [+] EMBL BI507404 [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAG AAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAGAATTTCAATTTTGAAACACCAAACTCAACG] [+] EMBL BI504208 [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAA ] [+] EMBL BI509203 [GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAA ] [+] EMBL BI506702 [ CTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGAAG AAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAGAATTTCAATTTTGAAACACCAAACTCAAC ] [+] EMBL BI503139 [ CGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGGGGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTTATTGCACTTCTCGATATGTCTTCGATTCGCTGCTACGCCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACTTTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGGCACGTGGTATCCCGTGTCGA NNNAAAAAAAATATATTTCTATATATACACATCTTATAAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACNNNTAATGCAACAAAATATCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACT ] consensusID : consensus_114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [GTATATAAAAAAAGAAGAAAAAGAAACAACTAATGCAACAAAATATCGATTGGTACACAGAACACAACTGTCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCGTCCTTAACTCCTTGGCACGTTAGGACAATCTACAAANNNATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACGAAAAAAAAAAACAAAAGAAGAAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAATGATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGAGTATCGTCGGTCATAGGCCGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAGNCCCTGTATCCCCAACAGGTCGCTCATCGAGTAAGTGAGAGTGGCGGCCCGAGACGCTGCCGCTGCCGCGACCGGGTGG] [+] EMBL BI504881 [GTATATAAAAAAAGAAGAAAAAGAAACAACTAATGCAACAAAATATCGATTGGTACACAGAACACAACTGTCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATTCTACATAAAATTGCACGCCTCCTTAACTCCTTGGCACGTTAGGACAATCTACAAATAAATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACG AAAAAAAAAACAAAAGAAGAAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAATGATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGAGTATCGTCGGTCATAGGCCGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAGNCCCTGTATCCCCAACAGGTCGCTCAT ] [+] EMBL BI510291 [ GTCCTTAACTCCTTGGCACGTTAGGACAATCTAC AANNNATTCATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACGAAAAAAAAAAACAAAAGAAGAAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAATGATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGAGTATCGTCGGTCATAGGCCGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAGGCCCTGTATCCCCAACAGGTCGCTCATCGAGTAAGTGAGAGTGGCGGCCCGAGACGCTGCCGCTGCCGCGACCGGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_114#0 GAACTGAGCTTCTCGAGCAGTCTCGCGAGAATTCGCTTATTCCCACACTCGAATCCTCGG 60 consensus_114#1 -------GTATATAAAAAAAGAAGAAAAAGAAACAACTAATGCAACA----AAATATCGA 49 * * * * * * * * ** * * *** ** *** consensus_114#0 GGGGGATAAAAAGGAATGGTTTCGTCTAGGCTACGTTT-ATTGCACTTCTCGATATGTCT 119 consensus_114#1 TTGGTACACAGAACACAACTGTCGCAATAAATAAGTCTCACAAAGGAACAGGATACCAAC 109 ** * * * * * * *** ** ** * * * **** consensus_114#0 TCGATTCGCTGCTACG--CCAAGCCCGGAAATCAACTGCTTCATAATTTACGCTAATACT 177 consensus_114#1 ACGTCAAACCAAAACGAACTCGACCAAACAACACGCTTCCCCAAACTTTCCACTAACCAT 169 ** * *** * ** ** ** * ** * *** * **** * consensus_114#0 TTCCCGAAAACGAAGGCGACATGTCACAATCGAGGAATGTTCGAAGTACCGCAAAAAGGG 237 consensus_114#1 TCTACATAAAATTGCACGCGTCCTTAACTCCTTGGCACGTTAGGACAATCTACAAANNNA 229 * * *** ** * * * ** * *** * * * * *** consensus_114#0 CACGTGGTATCCCGTGTCGAAGAAAAAAAAAAATAT-ATTTCTATATATACACATCTTAT 296 consensus_114#1 TTC-----ATCCATTAAAAATATACAACCTACTTATTACCTCTACCTCTCTACGCGTAAC 284 * **** * * * ** * *** * **** * * ** * * consensus_114#0 AAAATTCTATATATATATAAAAAAAGAAGAAGAAGAAACAACTAATGCAACAAAATATCG 356 consensus_114#1 AAATTGTTCCAAAATTTCAATTTTTGATCACGAAAACACACCAAACTCAACGAAAAAAAA 344 *** * * * * * ** ** * *** * *** * ** **** *** * consensus_114#0 CAATAAATAAGTCTCACAAAGGAACAGGATACCAACACGTC--AAACCAAAACGAACTCG 414 consensus_114#1 AAACAAAAGAAG---AAGAATCTATCCAAAACCTATCCATCCGGAAGAGAAACTGAAT-G 400 ** *** * * ** * * *** * * ** ** **** * * * consensus_114#0 ACCAAACAACACGCTTCCCCAAACTTTCCACTAACCATT-----CTACATAAAATTGCAC 469 consensus_114#1 ATCGAAAGAAAGAATGCACTGCACCCTTGCCAGCCTATTGGGGCCTGGTAAGGGGCGTGA 460 * * ** * * * * * ** * * * *** ** * * consensus_114#0 GCCTCCTTAACTCCTTGGCACGTTAGGACGAATCTACAAATAAATTCATCCATTAAAAAT 529 consensus_114#1 GTATCGTCGG-TCATAGGC-CGATCGTGGGTATCGGATGGTAGACGGCGCCCATGTCGAG 518 * ** * ** * *** ** * * * *** ** * ** * * consensus_114#0 ATACAACCTACTTATTACCTCTACCTCTCTACGCGTAACAA-ATTGTTCCAGAATTTCAA 588 consensus_114#1 NCCCTGTATCCCCAACAGGTCGCTCATCGAGTAAGTGAGAGTGGCGGCCCGAGACGCTGC 578 * * * * * ** * ** * * * ** * consensus_114#0 TTTTGAAACACCAAACTCAACG 610 consensus_114#1 CGCTGCCGCGACCGGGTGG--- 597 ** * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |