These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence [CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTGGAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATAACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTTACAGAGGTGTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAATACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCACATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT] [+] EMBL BI512999 [CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTGGAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATAACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTT ] [+] EMBL BI514289 [ GAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGACTGAAGGAGTGAGAGGACTTTACAGAGGTGTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAATACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCACATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT] consensusID : consensus_1187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACACGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGTATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGTTTTGTACCTGGAATGTTTGGCGTCTCACATGGTGCTATTCAATTTATGGTGTACGAAGAATTGAAGAATTGGTACAACAATTATTTGAATGTTCCGATTGATACGAAGCTGAGCACATGGGAATATATTTTCTTTGCAGCAGTTTCAAAA] [+] EMBL BI516896 [GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACACGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGTATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGTTTTGTACCTGGAATGTTTGGCGTCTCACATGGTGCTATTCAATTTATGGTGTACGAAGAATTGAAGAATTGGTACAACAATTATTTGAATGTTCCGATTGATACGAAGCTGAGCACATGGGAATATATTTTCTTTGCAGCAGTTTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1187#0 CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTG 60 consensus_1187#1 ------------------------------------------------------------ consensus_1187#0 GAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATA 120 consensus_1187#1 ------------------------------------------------------------ consensus_1187#0 ACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCG 180 consensus_1187#1 ------------------------------------------------------------ consensus_1187#0 GGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGT 240 consensus_1187#1 ------------------------------------------------------------ consensus_1187#0 ATATCTGGTGGCGTGGTTTCCACCTTG---ATGCTGCATCCGTTGGACTTGATCAAGAC- 296 consensus_1187#1 GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACA 60 * * * * * ** ** ** *** **** ** * * ***** consensus_1187#0 ----TAGATTCGCAGT-TAGCGATGGCCACTCACGTGTGGGTCCAC---AATACAAGAGT 348 consensus_1187#1 CGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGT 120 * * ** * ** **** * * * ** *** *** ** ** consensus_1187#0 CTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTTACAGAGGT 408 consensus_1187#1 ATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGT 180 * * * ** *** * ***** ** * ******** ***** * ** ***** consensus_1187#0 GTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAAT 468 consensus_1187#1 TTTGTACCTGGAAT------GTTTGGCGTCTCACATGGT-GCTATTCAATTT------AT 227 * ** * * ***** ** *** ****** *** ** consensus_1187#0 ACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCAC 528 consensus_1187#1 GGTGT----ACGAAGAATTGAAGAATTGGTA-CAACAATTATTTGAATGTTCCGATTGAT 282 * ** ** * * ** ** ** **** **** * consensus_1187#0 ATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT 587 consensus_1187#1 A----CGAAGCTGAGCACATGGGAAT--ATATTTTCTTTGCAGCAGTTTCAAAA----- 330 * ** *** * * ** ***** ** *** ** ** * ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |