These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence [AATCGACAATGGCGATGAAGAGCAAGAAGCAGTATACCGGGCCCAGCCTCGGATCGAAAAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTATTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGAGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCAACGATACGCCAGCTTTGGCTCCCGCCTCGTTACAGC] [+] EMBL BI514033 [AATCGACAATGGCGATGAAGAGCAAGAAGCAGTATACCGGGCCCAGCCTCGGATCGAAAAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTATTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGAGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCAACGATACGCCAGCTTTGGCTCCCGCCTCGTTACAGC] [+] EMBL BI514066 [AATCGACAATGGCGATGAAGAGCAAGAAGCAGTATACCGGGCCCAGCCTCGGATCGAAAAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTATTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGA ] consensusID : consensus_1188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [CTACACGAGGAAAGCAGCCCTGGACGCTCAGAATGCTTTGCACAACGTGAAAACCTTCAATGGGATGCGGCATCCGATCCAGATGAAGCCCGCGGACAGCGAGAACAGAAACGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGNGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCA] [+] EMBL BI510673 [CTACACGAGGAAAGCAGCCCTGGACGCTCAGAATGCTTTGCACAACGTGAAAACCTTCAATGGGATGCGGCATCCGATCCAGATGAAGCCCGCGGACAGCGAGAACAGAAACGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGACGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAGCACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAACGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGTGAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGNGGATGCAACAACTTCAGACGAATCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1188#0 AATCGACAATGGCGATGAAGAGCAAGAAGC--AGTATACCGGGCCCAGCCTCGGATCGAA 58 consensus_1188#1 ---CTACACGAGGAAAGCAGCCCTGGACGCTCAGAATGCTTTGCACAACGTGAAAACCTT 57 * *** * * * ** * ** ** ** ** * ** ** * * * * consensus_1188#0 AAGTCATTATCCTGCAATCAGTCAAGCTTATTGGGCACCACAGCCACAAAATACACCTTA 118 consensus_1188#1 CAATGGG-ATGCGGCATCCGATCCAG---ATGAAGC-CCGCGGACAGCGAGAACA----- 107 * * ** * *** * ** ** ** ** ** * * ** * *** consensus_1188#0 TTCCGTCCCAGAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGA 178 consensus_1188#1 ----GAAAC-GAACGTAAATTGTTCGTTGGTATGCTGTCCAAAAAGTTTACCGAGAACGA 162 * * ************************************************** consensus_1188#0 CGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAG 238 consensus_1188#1 CGTTAGAAACATGTTCAGCGTGTATGGAACCATCGAGGAATGCTCGGTGCTGAGGGACAG 222 ************************************************************ consensus_1188#0 CACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAA 298 consensus_1188#1 CACCGGGAAAAGTAAAGCCTGTGCCTTCGTTACCTTCGCTAGTAAACAATACGCCATCAA 282 ************************************************************ consensus_1188#0 CGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGT 358 consensus_1188#1 CGCCATTAAAGCTCTTCATCACTCGCAAACGATGGAGGGATGCTCGTCGCCGCTGGTTGT 342 ************************************************************ consensus_1188#0 GAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGAGGATGCAACAACTTCAGACGAA 418 consensus_1188#1 GAAATTTGCAGACACGCAGAAGGAAAAGGACCAGAAGNGGATGCAACAACTTCAGACGAA 402 ************************************* ********************** consensus_1188#0 TCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCAACGATACGCCAGC 478 consensus_1188#1 TCTTTGGAATATAGCAGGAGTCAATATGGCGCCGCATTACCTGACCA------------- 449 *********************************************** consensus_1188#0 TTTGGCTCCCGCCTCGTTACAGC 501 consensus_1188#1 ----------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |