These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 653 fasta sequence [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATTTAGTGTAAGAGTTTTTTTGTTGAAACTATATATATTTATGTAAATAAAATAGTTAAATACTCAAAA] [+] EMBL BI506845 [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGGTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATTTAGTGTAAGAGTTTTTTTGTTGAAACTATATATATTTATGTAAATAAAATAGTTAAATACTCAAAA] [+] EMBL BI506556 [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGACCAATTAAAATATCA ] consensusID : consensus_1190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CAGATCTCTCATTGTTGATTTTTCCAGAGAATCGCAGTTTGATTACCGCGTTTTTTTATTCAGATTTGAGACTTATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCACATATGTTTTTTATGCGTGGGCATGCAGCACCGAACTATCATCAAGGAAAATTCAAAATTCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAACTCATATTATTTTGTACAATGAAATCTTTCTGTATATCTGTTCAAGTTTATAACAACAGATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATACACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTATATAATGCTCCAAGAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAGAACAGCCGCTTCTATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT] [+] EMBL BE844415 [CAGATCTCTCATTGTTGATTTTTCCAGAGAATCGCAGTTTGATTACCGCGTTTTTTTATTCAGATTTGAGACTTATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCACATATGTTTTTTATGCGTGGGCATGCAGCACCGAACTATCATCAAGGAAAATTCAAAATTCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAACTCATATTATTTTGTACAATGAAATCTTTCTGTATATCTGTTCAAGTTTATAACAACAGATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATACACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTATATAATGCTCCAAGAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAGAACAGCCGCTTCTATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1190#0 TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTC 60 consensus_1190#1 -----------------------------------CAGAT-CTCTCATTGTTGATTTTTC 24 **** * ** * * *** consensus_1190#0 AAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATC 120 consensus_1190#1 CAG-AGAATCGCAGTTTGATTACC-------GCGTTTTTTTATTCAG--ATTTGAGACTT 74 ** ***** *** * ** * * ** * ** ** * ** * consensus_1190#0 AGAAAT-AGCG-ATACCAACTTTACAAAAACTCGGAATTACTTATTACAA---TCCCCAA 175 consensus_1190#1 ATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCAC 134 * **** * * * * ** * * ** ** ** * * * * *** consensus_1190#0 GTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAA 235 consensus_1190#1 ATATGTTTTTTATGCGTGGGCATG-CAGCACCGAACTATCAT-CAAGGAAAATTCAAAAT 192 *** * * * ** *** * * *** * *** *** ** consensus_1190#0 GTATTACTGTTTG-TAATCGATAATCAAACACG-CAATAGTGCAGGCATCATTGAAGCAG 293 consensus_1190#1 TCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAA 252 * ***** * ** * * *** * *** *** ** ** * consensus_1190#0 CTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTA--TCCATATCGTCA 351 consensus_1190#1 CTCATATTATT-TTGTACAATG-AAATCTTTCTGTATATCTGTTCAAGTTTATAACAACA 310 **** * * * * ******* * * ** * * *** * ** consensus_1190#0 AGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTG-TGACCTGATGAATG 410 consensus_1190#1 GATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATA 370 ** * * * **** * ** ** * * * * ** ** consensus_1190#0 -GTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGAT-ACCAATATTCGAAAGTGT 468 consensus_1190#1 CACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTAT 430 * * * * ** * * ** * *** * * ** * * consensus_1190#0 ATC-TGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATC 527 consensus_1190#1 ATAATGCTCCAA-GAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAG 489 ** ** * ** ***** ** ** * * * * * ** ** ** * consensus_1190#0 TGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATT 587 consensus_1190#1 AACAGCC----GCTTCTATGAATGCTACTCATTTGTTACACTGTGATGG-AAAAGATATT 544 ** * * * ** * * * * * * * * * * * ** * *** consensus_1190#0 TAGTGTAAGAGTTTTTTTGTTGAAACTATATAT-ATTTATGTAAATAAAATAGTTAAATA 646 consensus_1190#1 AACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT------------------- 585 * *** *** ** * ** ** * * *** consensus_1190#0 CTCAAAA 653 consensus_1190#1 ------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |