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Apis mellifera
cluster # 1190 cluster # 1190       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1190#0 length = 653 sequences # 2  
consensus_1190#1 length = 585 sequences # 1  

consensusID : consensus_1190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 653
fasta sequence
                              [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATTTAGTGTAAGAGTTTTTTTGTTGAAACTATATATATTTATGTAAATAAAATAGTTAAATACTCAAAA]

[+] EMBL BI506845             [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGGTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATTTAGTGTAAGAGTTTTTTTGTTGAAACTATATATATTTATGTAAATAAAATAGTTAAATACTCAAAA]
[+] EMBL BI506556             [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGACCAATTAAAATATCA                                                                                        ]


>consensus_1190#0 TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTC AAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATC AGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATC ACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATT ACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTT GGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAAC GATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGT ACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACT GAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGA TGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATTTAGTGTAAGAGTT TTTTTGTTGAAACTATATATATTTATGTAAATAAAATAGTTAAATACTCAAAA



consensusID : consensus_1190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence
                              [CAGATCTCTCATTGTTGATTTTTCCAGAGAATCGCAGTTTGATTACCGCGTTTTTTTATTCAGATTTGAGACTTATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCACATATGTTTTTTATGCGTGGGCATGCAGCACCGAACTATCATCAAGGAAAATTCAAAATTCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAACTCATATTATTTTGTACAATGAAATCTTTCTGTATATCTGTTCAAGTTTATAACAACAGATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATACACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTATATAATGCTCCAAGAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAGAACAGCCGCTTCTATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT]

[+] EMBL BE844415             [CAGATCTCTCATTGTTGATTTTTCCAGAGAATCGCAGTTTGATTACCGCGTTTTTTTATTCAGATTTGAGACTTATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCACATATGTTTTTTATGCGTGGGCATGCAGCACCGAACTATCATCAAGGAAAATTCAAAATTCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAACTCATATTATTTTGTACAATGAAATCTTTCTGTATATCTGTTCAAGTTTATAACAACAGATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATACACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTATATAATGCTCCAAGAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAGAACAGCCGCTTCTATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT]


>consensus_1190#1 CAGATCTCTCATTGTTGATTTTTCCAGAGAATCGCAGTTTGATTACCGCGTTTTTTTATT CAGATTTGAGACTTATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCT TTGAAGTTTACCACATATGTTTTTTATGCGTGGGCATGCAGCACCGAACTATCATCAAGG AAAATTCAAAATTCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGA TTCTTTGCCTAACTCATATTATTTTGTACAATGAAATCTTTCTGTATATCTGTTCAAGTT TATAACAACAGATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGT ATACTGGATACACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCC TCATGCTTATATAATGCTCCAAGAATTTTATATTTTTATCATTGAATTGGCACGTTTGTG CAAAAAAAGAACAGCCGCTTCTATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGA TATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1190#0      TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTC 60
consensus_1190#1      -----------------------------------CAGAT-CTCTCATTGTTGATTTTTC 24
                                                          ****  *  ** *     *  ***

consensus_1190#0      AAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATC 120
consensus_1190#1      CAG-AGAATCGCAGTTTGATTACC-------GCGTTTTTTTATTCAG--ATTTGAGACTT 74
                       ** ***** ***  *    **         *  * ** * ** **   *  **    * 

consensus_1190#0      AGAAAT-AGCG-ATACCAACTTTACAAAAACTCGGAATTACTTATTACAA---TCCCCAA 175
consensus_1190#1      ATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCAC 134
                      * **** *  * * *  ** *  *    ** **    **  *   *   *   *  *** 

consensus_1190#0      GTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAA 235
consensus_1190#1      ATATGTTTTTTATGCGTGGGCATG-CAGCACCGAACTATCAT-CAAGGAAAATTCAAAAT 192
                       ***     *   *    *   **  *** *   * *** *  ***   ***     ** 

consensus_1190#0      GTATTACTGTTTG-TAATCGATAATCAAACACG-CAATAGTGCAGGCATCATTGAAGCAG 293
consensus_1190#1      TCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAA 252
                         *  *****   * **  * *   *** *   ***    ***   **  **     * 

consensus_1190#0      CTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTA--TCCATATCGTCA 351
consensus_1190#1      CTCATATTATT-TTGTACAATG-AAATCTTTCTGTATATCTGTTCAAGTTTATAACAACA 310
                      ****  *      *   *   *  *******     *   * ** *  *  *** *  **

consensus_1190#0      AGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTG-TGACCTGATGAATG 410
consensus_1190#1      GATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATA 370
                             ** * *  *   ****    *  **   **   * *   *    *  ** ** 

consensus_1190#0      -GTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGAT-ACCAATATTCGAAAGTGT 468
consensus_1190#1      CACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTAT 430
                          * *    *     *   ** *   * **  *   *** *    *  **     * *

consensus_1190#0      ATC-TGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATC 527
consensus_1190#1      ATAATGCTCCAA-GAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAG 489
                      **  ** * **  ***** ** ** *       *   *  * *  **  **   ** *  

consensus_1190#0      TGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATT 587
consensus_1190#1      AACAGCC----GCTTCTATGAATGCTACTCATTTGTTACACTGTGATGG-AAAAGATATT 544
                        **  *    * *   ** *   * * * *  * * *  *  * *      ** * ***

consensus_1190#0      TAGTGTAAGAGTTTTTTTGTTGAAACTATATAT-ATTTATGTAAATAAAATAGTTAAATA 646
consensus_1190#1      AACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT------------------- 585
                       *   *** ***  **    *  **    ** * *  ***                    

consensus_1190#0      CTCAAAA 653
consensus_1190#1      -------
                             




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)