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Apis mellifera
cluster # 1220 cluster # 1220       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1220#0 length = 579 sequences # 2  
consensus_1220#1 length = 529 sequences # 1  

consensusID : consensus_1220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence
                              [ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA]

[+] EMBL BI509014             [ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA]
[+] EMBL BI510459             [      GGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCA                       ]


>consensus_1220#0 ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTA AACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAA GTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGC TTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATA ACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGAT TTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAG AATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTT GGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAA TGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAA GGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA



consensusID : consensus_1220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence
                              [AATGCACATTTCAACATCGACATCGTCATTTATCATTGCGAATAAAACGCATCCATCTTCCTTGCCTTGATGAATCTTTACATCACCGAGTTATTTTCCAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGACGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTATTATTCGAACCATTTGCAGTTGTAGTGCTGTCCATAGGATTTCCAAGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGTGTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACCTGCCGTTCGTAAATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAATAGCAGCTCCTAAATTCAAGTTCAAACTT]

[+] EMBL BI514789             [AATGCACATTTCAACATCGACATCGTCATTTATCATTGCGAATAAAACGCATCCATCTTCCTTGCCTTGATGAATCTTTACATCACCGAGTTATTTTCCAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGACGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTATTATTCGAACCATTTGCAGTTGTAGTGCTGTCCATAGGATTTCCAAGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGTGTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACCTGCCGTTCGTAAATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAATAGCAGCTCCTAAATTCAAGTTCAAACTT]


>consensus_1220#1 AATGCACATTTCAACATCGACATCGTCATTTATCATTGCGAATAAAACGCATCCATCTTC CTTGCCTTGATGAATCTTTACATCACCGAGTTATTTTCCAAGTGATAACTGGTTAGTGCC AAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAA TGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGACGTAGATCCAAG AGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTATTATTCGAACCATTTGCAGT TGTAGTGCTGTCCATAGGATTTCCAAGATAACTCATATTAGAAGGCATTCCAATTCCCAT TCCAAGAAGATTATATTTAGCAAGTGTAGCAATAGCAGATAAAATTTCACTAGCAGCAGG TTCGGAAAAACCTGCCGTTCGTAAATTTAATTTTATATGTTCCAATAATTGCGTTGTCAC TGGTGCTGTACCCGCTGTAATAGCAGCTCCTAAATTCAAGTTCAAACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1220#0      ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTA 60
consensus_1220#1      --AATGCACATTTCAACATCGACATCGTCA-TTTATCATTGCGAATAAAACGCATCCATC 57
                        ** *     *     ** *    **  * ****     * *** * *  **  ** * 

consensus_1220#0      AACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAA 120
consensus_1220#1      TTCCTTGCCTTGA----TGAATCTTTACATCACCGAGTT--ATTTTCCAAGTGA-TAACT 110
                        * *   **  *    ** *    *  ** ** *** *  **  *     ***  **  

consensus_1220#0      GTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGC 180
consensus_1220#1      GGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGT 170
                      *    ** *        **** **  *  *   ** *     *    *     ** *** 

consensus_1220#0      TTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATA 240
consensus_1220#1      TTTGTCTGAATGGATCAAAGGGCTCGT-ATCTGTCAAGT-GTATTACGTGGTGTAGGAGA 228
                      **  ***  *  ****    *     * *  * *  **  **   *  **   ***** *

consensus_1220#0      ACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGAT 300
consensus_1220#1      ---CGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTAT---- 281
                         ***       *   *  *     *   *   **  * ** *  **    ***     

consensus_1220#0      TTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTC-CCA 359
consensus_1220#1      -----TATTCGAACCATTTGC------AGTTGTAGTGC-----TGTCCATAGGATTTCCA 325
                           * ** *  *** **        * *   * **       * ***  ** *  ***

consensus_1220#0      GAATAGCTCCCACTATAAC-CTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTG 418
consensus_1220#1      AGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGT 385
                        *** ***  * ** **  *  * ***** * **  * *     **    *        

consensus_1220#0      TTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCA 478
consensus_1220#1      GTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACC--TGCCGTTCGTA 443
                       * **     *   *  *       **    ** **    *        ****      *

consensus_1220#0      AATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCA 538
consensus_1220#1      AATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAAT-- 501
                      ***  * * ** * *     ****     *    *  ** ** * *  * *     **  

consensus_1220#0      AAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA 579
consensus_1220#1      AGCAGCTCCTAAAT-TCAAGTTCAA-ACTT----------- 529
                      *   **** **  * ******  *  ** *           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)