These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence [ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA] [+] EMBL BI509014 [ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA] [+] EMBL BI510459 [ GGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTAAACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAAGTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGCTTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATAACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGATTTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTCCCAGAATAGCTCCCACTATAACCTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTGTTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCA ] consensusID : consensus_1220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [AATGCACATTTCAACATCGACATCGTCATTTATCATTGCGAATAAAACGCATCCATCTTCCTTGCCTTGATGAATCTTTACATCACCGAGTTATTTTCCAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGACGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTATTATTCGAACCATTTGCAGTTGTAGTGCTGTCCATAGGATTTCCAAGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGTGTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACCTGCCGTTCGTAAATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAATAGCAGCTCCTAAATTCAAGTTCAAACTT] [+] EMBL BI514789 [AATGCACATTTCAACATCGACATCGTCATTTATCATTGCGAATAAAACGCATCCATCTTCCTTGCCTTGATGAATCTTTACATCACCGAGTTATTTTCCAAGTGATAACTGGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCAAAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGACGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTATTATTCGAACCATTTGCAGTTGTAGTGCTGTCCATAGGATTTCCAAGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGTGTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACCTGCCGTTCGTAAATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAATAGCAGCTCCTAAATTCAAGTTCAAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1220#0 ACAACGGGTGGTAGGTGATAGTGGACGAGAGTTTAAAGAAGGGAAGAGAGAGCTACCGTA 60 consensus_1220#1 --AATGCACATTTCAACATCGACATCGTCA-TTTATCATTGCGAATAAAACGCATCCATC 57 ** * * ** * ** * **** * *** * * ** ** * consensus_1220#0 AACATCATCTCAAGATGTGGAAAGATGAATAACGGAGCTCAATAATGGGGATGAACAAAA 120 consensus_1220#1 TTCCTTGCCTTGA----TGAATCTTTACATCACCGAGTT--ATTTTCCAAGTGA-TAACT 110 * * ** * ** * * ** ** *** * ** * *** ** consensus_1220#0 GTGCTGTACTTGAAATCAATGGATCATATTGGCGAGGGCATTCTGACGTGCTCGTTTTGC 180 consensus_1220#1 GGTTAGTGCCAAGGCCAAATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGT 170 * ** * **** ** * * ** * * * ** *** consensus_1220#0 TTCCTCTTCACTGATCCTTTGCTCAATTAAATATTGAGCAGTGCCAATTGCATTAGGATA 240 consensus_1220#1 TTTGTCTGAATGGATCAAAGGGCTCGT-ATCTGTCAAGT-GTATTACGTGGTGTAGGAGA 228 ** *** * **** * * * * * ** ** * ** ***** * consensus_1220#0 ACCCGTGATAGTCACTATGCGGTTCCTGGTACCAGGAGCGAACATGCCCTTCTTAGAGAT 300 consensus_1220#1 ---CGTAGATCCAAGAGTAGGAACTGTTCCAATTGGCCCAAATACACCACCATTAT---- 281 *** * * * * * ** * ** * ** *** consensus_1220#0 TTGTATGTTGGCGCCACTTAGGTGCTGAATCTCAATGAGGGCACGACCACCGGGTC-CCA 359 consensus_1220#1 -----TATTCGAACCATTTGC------AGTTGTAGTGC-----TGTCCATAGGATTTCCA 325 * ** * *** ** * * * ** * *** ** * *** consensus_1220#0 GAATAGCTCCCACTATAAC-CTCTGCAATTTCTATGTCTACTTTCTTGGTCTCCTTGTTG 418 consensus_1220#1 AGATAACTCATATTAGAAGGCATTCCAATTCCCATTCCAAGAAGATTATATTTAGCAAGT 385 *** *** * ** ** * * ***** * ** * * ** * consensus_1220#0 TTGGCGTCTACCTGTGTAGGACTCTTACTTACAAGTGATAACTGGTTAGTGCCAAGGCCA 478 consensus_1220#1 GTAGCAATAGCAGATAAAATTTCACTAGCAGCAGGTTCGGAAAAACC--TGCCGTTCGTA 443 * ** * * * ** ** ** * **** * consensus_1220#0 AATGAATTGTTGTTTAGATGAATAGCACTGGCAGCTGTGTTGTTTTGTCTGAATGGATCA 538 consensus_1220#1 AATTTAATTTTATATGTTCCAATAATTGCGTTGTCACTGGTGCTGTACCCGCTGTAAT-- 501 *** * * ** * * **** * * ** ** * * * * ** consensus_1220#0 AAGGGCTCGTATCTGTCAAGTGTATTACGTGGTGTAGGAGA 579 consensus_1220#1 AGCAGCTCCTAAAT-TCAAGTTCAA-ACTT----------- 529 * **** ** * ****** * ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |