These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 844 fasta sequence [TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATCTGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGCAGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTTTGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGTGGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGAAAAGAAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGAAAAACTCAATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAAAAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATATATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATTCAAACATGCCCAAACATA] [+] EMBL BI506917 [TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATCTGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGCAGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTTTGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGTGGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGA ] [+] EMBL BI509446 [ AATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGAAAAGAAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGAAAAACTCAATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAAAAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATATATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATTCAAACATGCCCAAACATA] consensusID : consensus_1227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [AGATCAATTGGTGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTCTTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTTCGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATGTTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGATCAAATTAACAAAGAAGATAGTTTTAAAGCTGTTGTTGATTACATAGATGCTCAATTTGAAGCATATTTACAAGAAGAATTAAAGATAAAACGATCTTTGGCAACTTATCACGATAGTCGTATTCATGTTTGCTTGTATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTGATCTAGTCTGTATGAAGAAACTTGACACAAAAGTTAATATTATACCAATTATTGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA] [+] EMBL BI510310 [AGATCAATTGGTGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTCTTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTTCGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATGTTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGATCAAATTAACAAAGAAGATAGTTTTAAAGCTGTTGTTGATTACATAGATGCTCAATTTGAAGCATATTTACAAGAAGAATTAAAGATAAAACGATCTTTGGCAACTTATCACGATAGTCGTATTCATGTTTGCTTGTATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTGATCTAGTCTGTATGAAGAAACTTGACACAAAAGTTAATATTATACCAATTATTGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1227#0 TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATC 60 consensus_1227#1 ------------------------------------------------------------ consensus_1227#0 TGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGC 120 consensus_1227#1 ------------------------------------------------------------ consensus_1227#0 AGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTT 180 consensus_1227#1 ------------------------------------------------------------ consensus_1227#0 TGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGT 240 consensus_1227#1 ------------------------------------------------------------ consensus_1227#0 GGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATAT 300 consensus_1227#1 -------------------------------------------------AGATCAATTGG 11 ** *** * consensus_1227#0 GGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGAT- 359 consensus_1227#1 TGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTC 71 *** * ** ** * ** * ***** * * *** * *** * **** * * consensus_1227#0 TAGAACAGATGGGTTTTAGTGATGTTGA---TAGTGAAAAT----AAACCAGTTAGTTTT 412 consensus_1227#1 TTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTT 131 * * * ** * *** *** * ** * ** * ** * * * ** consensus_1227#0 CAACAAACCTGCGAAGCAAAAAGATCCATAC--ATTTGCAAGAACTTCAACAAAAAGAAG 470 consensus_1227#1 CGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATG 191 * ** ** * *** ** * * ** * *** * *** *** * * consensus_1227#0 ATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAG 530 consensus_1227#1 TTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGA--TCAAATTAACAAA-- 247 * * ** ** * * ** * *** * * *** ****** * * consensus_1227#0 CGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCA-TACAGAGGAAAAG 589 consensus_1227#1 ---GAAGATAGTTTTAAAGCTG--TTGTTGATTACATAGATGCTCAATTTGAAGCATATT 302 ** * ** ** * * * * * * * * * * *** * ** * * consensus_1227#0 AAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGA 649 consensus_1227#1 TACAAGAAGAATTAAAGATAAAACGATCTT-----TGGCAACTTATCA--CGATAGTCGT 355 * *** * * **** *** * ** ** * *** * * **** ** consensus_1227#0 AAAACTCA-ATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAA 708 consensus_1227#1 ---ATTCATGTTTGCTTG--TATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTG 410 * *** ** *** * *** ** * *** ***** *** consensus_1227#0 AAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATA-- 766 consensus_1227#1 ---ATCTAGTCTG-TATGAAGA-AACTTGACACAAAAGTTAATATTATACCAATTATTGC 465 ** * *** ** ** * ** * * ** * * ** *** * * *** consensus_1227#0 TATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATT 826 consensus_1227#1 TAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA------- 518 ** ** ** ** * *** * ** * ** *** * ****** consensus_1227#0 CAAACATGCCCAAACATA 844 consensus_1227#1 ------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |