These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [TCTATCTCTATGACTGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTCTGGTCTGAGGGAGAAGGTAATGATCGAGATGAATCTGTTTTTGATTGTGCTGCTGGACTCTGTGCTCTTTCACTACTGGATTCTCTAGACGAATTGTTGTTGTTGCTTTCCTTTGTCTTCTCAATAGGACTTGGGGTAGTCTTGAAAGACCCTCACACAGCATAGACCTTGCCGAGGTGCGTAGATAT] [+] EMBL BI511288 [TCTATCTCTATGACTGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTCTGGTCTGAGGGAGAAGGTAATGATCGAGATGAATCTGTTTTTGATTGTGCTGCTGGACTCTGTGCTCTTTCACTACTGGATTCTCTAGACGAATTGTTGTTGTTGCTTTCCTTTGTCTTCTCAATAGGACTTGGGGTAGTCTTGAAAGACCCTCACACAGCATAGACCTTGCCGAGGTGCGTAGATAT] consensusID : consensus_1230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 286 fasta sequence [TGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTGTAAAACGATTACGTTCTGCAGGATATACCACACAGATTCGTATTATTATTTTGCATGTAAGGGAAACATTATGTGGTAAGTATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAAAAAAAAAAATTAAATTCA] [+] EMBL BI507587 [TGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTTATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTGTAAAACGATTACGTTCTGCAGGATATACCACACAGATTCGTATTATTATTTTCCATGTAAGGGAAACATTATGTGGTAAGTATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAAAAAAAAAAA ] [+] EMBL BI509256 [ CACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATTTGCTGTGTGATTTTCATGATCAGATCGCCTGTAAAACGATTACGTTCTGCAGGATATACCACACAGATTCGTATTATTATTTTGCATGTAAGGGAAACATTATGTGGTAAGTATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAATATATTAATTTAAATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1230#0 TCTATCTCTATGACTGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTT 60 consensus_1230#1 --------------TGTTTTCTCGTTGTCTTCTATCATCGTATGATGGTCGTCGTCCTTT 46 ********************************************** consensus_1230#0 ATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATT 120 consensus_1230#1 ATCACTCATGTGTCTACTACGGTCAGATCTATCTCCTCGTTTGTGCTCGTCTTTTGAATT 106 ************************************************************ consensus_1230#0 TGCTGTGTGATTTTCATGATCAGATCGCCTCTGGTCTGAGGGAGAAGGTAATGATCGAGA 180 consensus_1230#1 TGCTGTGTGATTTTCATGATCAGATCGCCTGTAA----AACGATTACGTTCTG--CAGGA 160 ****************************** * * ** * ** ** * ** consensus_1230#0 TGAATCTGTTTTTGATTGTGCTGCTGGACTCTGTGCTCTTTCACTACTGGATTCTCTAGA 240 consensus_1230#1 TATA-CCACACAGATTCGTATTATT--ATTTTGCATGTAAGGGAAACATTATGTGGTAAG 217 * * * * ** * * * * ** ** ** ** consensus_1230#0 CGAATTGTTGTTGTTGCTTTCCTTTGTCTTCTCA-ATAGGACTTGGGGTAGTCTTGAAAG 299 consensus_1230#1 TATGTTGCAAGTTTGTTTGTTTGTTTTTTTCTCGTATAAAGTTCAAAGAAAA--AAAAAA 275 *** * * * * ** * ***** *** * * * *** consensus_1230#0 ACCCTCACACAGCATAGACCTTGCCGAGGTGCGTAGATAT 339 consensus_1230#1 AATTAAATTCA----------------------------- 286 * * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |