These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACAACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAGCCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGTGAGATTACACGACAGCATACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTAACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAGCGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAACCGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA] [+] EMBL BI507350 [ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACAACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAGCCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGTGAGATTACACGACAGCATACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTAACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAGCGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAACCGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA] consensusID : consensus_1311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGTGCACAGGGACCTGAAACCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCCGGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGGGCGTGCGGTGTCATTCTTTACATCCTTCTGGTCGGTTATCCGCCATTCTGGGACGAGGATCAGCATCGATTGTACGCGCAGATCAAGACCGGATCGTACGACTATCCAAGCCCAGAATGGGACACCGTCACGCCGGAAGCCAAGAACCTAATCAATCAGATGCTGACGGTGAACCCAAGCAAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACGTGAACGTGTCGCGTCCGTTGTCCACAGACAAGAGACT] [+] EMBL AB013287 [TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGTGCACAGGGACCTGAAACCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCCGGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGGGCGTGCGGTGTCATTCTTTACATCCTTCTGGTCGGTTATCCGCCATTCTGGGACGAGGATCAGCATCGATTGTACGCGCAGATCAAGACCGGATCGTACGACTATCCAAGCCCAGAATGGGACACCGTCACGCCGGAAGCCAAGAACCTAATCAATCAGATGCTGACGGTGAACCCAAGCAAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACGTGAACGTGTCGCGTCCGTTGTCCACAGACAAGAGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1311#0 ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACA 60 consensus_1311#1 ------------TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAA 48 ** * ** ** * * * **** * *** * consensus_1311#0 ACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAG 120 consensus_1311#1 GCGTACACCACT-GCCACCACAATG----GAGTTGTGCACAGGGAC--------CTGAAA 95 ** ** * * * * * ** * *** ** * ** * consensus_1311#0 CCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTT 180 consensus_1311#1 CCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTT 155 ********* ************************************************** consensus_1311#0 GGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCG-------TGAGA----- 228 consensus_1311#1 GGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCC 215 ******************************************* ** ** consensus_1311#0 --TTACACGA---CAGCA-TACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTA 282 consensus_1311#1 GGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGG 275 **** ** * * * * * * ** * * * * * *** ** consensus_1311#0 ACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACA----GCGAAGCGGA 338 consensus_1311#1 GCGTGCGGTGTCATTCTTTACATCCTTCTGGT-CGGTTATCCGCCATTCTGGGACGAGGA 334 * **** * * * * * *** ** ** * ** * ** * *** consensus_1311#0 CGCGTCTC-ACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAG 397 consensus_1311#1 TCAGCATCGATTGTACGCG-CAGATCAAGACCGGATCGTACGACTATC-CAAGCCCAGAA 392 * ** * **** * ** *** * * ** *** * * * ** consensus_1311#0 TTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAG 457 consensus_1311#1 TGGGACACCGTCACGCCGGAA-GCCAAGAACCTAATCAATCAGATGC-TGA--CGGTGAA 448 * * *** * * * * * * **** * *** * * * * *** * ** consensus_1311#0 CGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAAC---- 513 consensus_1311#1 C-CCAAGC--AAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACG 505 * *** ** * *** ** ** ** * *** * ** * * * consensus_1311#0 CGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA 553 consensus_1311#1 TGAACGTGTCGCGTCCGTTGTCCACAGA-CAAGAGACT-- 542 **** * * * ** * ** * * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |