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Apis mellifera
cluster # 1311 cluster # 1311       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1311#0 length = 553 sequences # 1  
consensus_1311#1 length = 542 sequences # 1  

consensusID : consensus_1311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence
                              [ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACAACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAGCCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGTGAGATTACACGACAGCATACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTAACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAGCGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAACCGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA]

[+] EMBL BI507350             [ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACAACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAGCCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGTGAGATTACACGACAGCATACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTAACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAGCGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAACCGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA]


>consensus_1311#0 ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACA ACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAG CCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTT GGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGTGAGATTACACGACAGC ATACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTAACCGGCGGCGAACTGTTC GAGGATATCGTGGCGCGAGAATTCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAA ATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGCACAGGGACCTGAAAGTACG TAGAGAAACGAATGTGTTACACGGATGAACTAGAGAGCGCCATGCTTGAGAGGGTCCAGT ACACCGGGAACGCAAAGGTTCAGTGTGTTTAACCGAACATTTTCAGATAAACGTTTAGGG ATCGAATGATCGA



consensusID : consensus_1311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence
                              [TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGTGCACAGGGACCTGAAACCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCCGGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGGGCGTGCGGTGTCATTCTTTACATCCTTCTGGTCGGTTATCCGCCATTCTGGGACGAGGATCAGCATCGATTGTACGCGCAGATCAAGACCGGATCGTACGACTATCCAAGCCCAGAATGGGACACCGTCACGCCGGAAGCCAAGAACCTAATCAATCAGATGCTGACGGTGAACCCAAGCAAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACGTGAACGTGTCGCGTCCGTTGTCCACAGACAAGAGACT]

[+] EMBL AB013287             [TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAGTTGTGCACAGGGACCTGAAACCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCCGGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGGGCGTGCGGTGTCATTCTTTACATCCTTCTGGTCGGTTATCCGCCATTCTGGGACGAGGATCAGCATCGATTGTACGCGCAGATCAAGACCGGATCGTACGACTATCCAAGCCCAGAATGGGACACCGTCACGCCGGAAGCCAAGAACCTAATCAATCAGATGCTGACGGTGAACCCAAGCAAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACGTGAACGTGTCGCGTCCGTTGTCCACAGACAAGAGACT]


>consensus_1311#1 TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAAGCGTACACCACT GCCACCACAATGGAGTTGTGCACAGGGACCTGAAACCCGAAAATCTACTCCTCGCAAGTA AGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTTGGATTGGCGATCGAGGTGCAGGGTG AAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCCGGTTACCTGAGCCCGGAAGTCCTGA AGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGGGCGTGCGGTGTCATTCTTTACATCC TTCTGGTCGGTTATCCGCCATTCTGGGACGAGGATCAGCATCGATTGTACGCGCAGATCA AGACCGGATCGTACGACTATCCAAGCCCAGAATGGGACACCGTCACGCCGGAAGCCAAGA ACCTAATCAATCAGATGCTGACGGTGAACCCAAGCAAAAGGATCACCGCCAGCGAGGCAT TGAAGCACCCATGGATCTGCCAACGTGAACGTGTCGCGTCCGTTGTCCACAGACAAGAGA CT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1311#0      ACGTATATATCTCCTGTTGGTGGATCAACCTACAGCATGGCCGCGTAAAAATGCAGGACA 60
consensus_1311#1      ------------TCTACAGCGAAGCGGACGCGTCTCACTGTATCCAACAAATCCTGGAAA 48
                                   **   *        **      **  *   *  * **** * *** *

consensus_1311#0      ACGGCAACGGTTTGTCGGAAGAGTGAGCAGGAATGTCGACGAGTCTGCTTCCTGTTGCAG 120
consensus_1311#1      GCGTACACCACT-GCCACCACAATG----GAGTTGTGCACAGGGAC--------CTGAAA 95
                       **   **   * * *   * * **    *   ***  **  *            ** * 

consensus_1311#0      CCCGAAAATTTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTT 180
consensus_1311#1      CCCGAAAATCTACTCCTCGCAAGTAAGGCGAAGGGCGCGGCTGTGAAATTAGCGGACTTT 155
                      ********* **************************************************

consensus_1311#0      GGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCG-------TGAGA----- 228
consensus_1311#1      GGATTGGCGATCGAGGTGCAGGGTGAAGCGCAGGCATGGTTCGGTTTCGCTGGGACGCCC 215
                      *******************************************       ** **     

consensus_1311#0      --TTACACGA---CAGCA-TACAGGAGGAGAACTATCATTACCTCGTTTTTGACCTCGTA 282
consensus_1311#1      GGTTACCTGAGCCCGGAAGTCCTGAAGAAAGAGCCGTACGGCAAGCCAGTCGACATCTGG 275
                        ****  **   * * * * * * ** *  *     *   *       * *** **   

consensus_1311#0      ACCGGCGGCGAACTGTTCGAGGATATCGTGGCGCGAGAATTCTACA----GCGAAGCGGA 338
consensus_1311#1      GCGTGCGGTGTCATTCTTTACATCCTTCTGGT-CGGTTATCCGCCATTCTGGGACGAGGA 334
                       *  **** *   *  *  *     *  ***  **   ** *  **    * ** * ***

consensus_1311#0      CGCGTCTC-ACTGTATCCAACAAATCCTGGAAAGCGTACACCACTGCCACCACAATGGAG 397
consensus_1311#1      TCAGCATCGATTGTACGCG-CAGATCAAGACCGGATCGTACGACTATC-CAAGCCCAGAA 392
                         *  ** * ****  *  ** ***  *    *     ** ***  * * *     ** 

consensus_1311#0      TTGCACAGGGACCTGAAAGTACGTAGAGAAACGAATGTGTTACACGGATGAACTAGAGAG 457
consensus_1311#1      TGGGACACCGTCACGCCGGAA-GCCAAGAACCTAATCAATCAGATGC-TGA--CGGTGAA 448
                      * * ***  * *  *   * * *   **** * ***   * * * *  ***    * ** 

consensus_1311#0      CGCCATGCTTGAGAGGGTCCAGTACACCGGGAACGCAAAGGTTCAGTGTGTTTAAC---- 513
consensus_1311#1      C-CCAAGC--AAAAGGATCACCGCCAGCGAGGCATTGAAGCACCCATGGATCTGCCAACG 505
                      * *** **   * *** **     ** ** *      ***   *  **  * *  *    

consensus_1311#0      CGAACATTTTCAGATAAACGTTTAGGGATCGAATGATCGA 553
consensus_1311#1      TGAACGTGTCGCGTCCGTTGTCCACAGA-CAAGAGACT-- 542
                       **** * *   *      **  *  ** * *  **    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)