These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [AATCTGGCCTGGTTCGCCCTCTCCAAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATTGCTGCTGCAAAACAACGAAAAGATGGCTACTTATTTGACAAAGAAGCAATATTGGAATATGTTCTAACCAAAAAGAAAGAGTATGCAAGAAAATTGAAAGAGTATGAAAAACAAAAACAACAAGAAGAGGAACAATCTAATGAAAAAAGTGCCAACGAAGAATTACAAAAGTTGCAAAATTTTTTAAAAGGAGAGAAAAATATCGTTTCCAGAAGTCAAACTGTAGCCAAAGAACCTACATCTTCAGTTTCTAATATGAGCAATGGTAAAGATAAGATGCTACCAAGTTTTTGGATTCCATCTAAAACACCAGAAGCAAAAGAAACTATGGTACAGAAACCAGATAAAACAATCTATTGTCCTGTTAGTGGAAAACCATTGAAAATAAAGGATTTAATTTCTGTGAAATTTACTGAAGTAAAAGATCCAGATGACAAGAAATCTCTTATCGTTAAACA] [+] EMBL BI514463 [AATCTGGCCTGGTTCGCCCTCTCCAAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATTGCTGCTGCAAAACAACGAAAAGATGGCTACTTATTTGACAAAGAAGCAATATTGGAATATGTTCTAACCAAAAAGAAAGAGTATGCAAGAAAATTGAAAGAGTATGAAAAACAAAAACAACAAGAAGAGGAACAATCTAATGAAAAAAGTGCCAACGAAGAATTACAAAAGTTGCAAAATTTTTTAAAAGGAGAGAAAAATATCGTTTCCAGAAGTCAAACTGTAGCCAAAGAACCTACATCTTCAGTTTCTAATATGAGCAATGGTAAAGATAAGATGCTACCAAGTTTTTGGATTCCATCTAAAACACCAGAAGCAAAAGAAACTATGGTACAGAAACCAGATAAAACAATCTATTGTCCTGTTAGTGGAAAACCATTGAAAATAAAGGATTTAATTTCTGTGAAATTTACTGAAGTAAAAGATCCAGATGACAAGAAATCTCTTATCGTTAAACA] consensusID : consensus_1409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [AAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATNNNNTGCTGCAAAACAACGGTGAGTTTCTCGAGGAGGACGCGCGGGGAGGGGGGCCGGAACACTAGCGACGTGCGCCTCAGAGTTCACATTATACACTCGTACGCGAGTCCTGGCTCGTGTCGGCCACCT] [+] EMBL BI506562 [AAATCCTGTTTCAACAATCTGATCTACTGCGTGGCGGACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATNNNNTGCTGCAAAACAACGGTGAGTTTCTCGAGGAGGACGCGCGGGGAGGGGGGCCGGAACACTAGCGACGTGCGCCTCAGAGTTCACATTATACACTCGTACGCGAGTCCTGGCTCGTGTCGGCCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1409#0 AATCTGGCCTGGTTCGCCCTCTCCAAATCCTGTTTCAACAATCTGATCTACTGCGTGGCG 60 consensus_1409#1 ------------------------AAATCCTGTTTCAACAATCTGATCTACTGCGTGGCG 36 ************************************ consensus_1409#0 GACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATTGCT-GCTGCAAAACAAC 119 consensus_1409#1 GACAGGCACTTCAGAAGCGCGTACGTCAAGCTTTTCCATTATNNNNTGCTGCAAAACAAC 96 ****************************************** ************* consensus_1409#0 GAAAAGATGGCTACTTATTTGACAAAGAAGCAATATTGGAATATGTTCTAACCAAAAAGA 179 consensus_1409#1 GGTGAG--------TTTCTCGAGGAGGACGCGCGG--GGAGGGGGGCCGGAACACTAGCG 146 * ** ** * ** * ** ** *** * * * ** * consensus_1409#0 AAGAGTATGCAAGAAAATTGAAAGAGTATGAAAA-ACAAAAACAACAAGAAGAGG-AACA 237 consensus_1409#1 AC--GTGCGCCTCAGAGTTCACATTATACACTCGTACGCGAGTCCTGGCTCGTGTCGGCC 204 * ** ** * * ** * * ** ** * * * * consensus_1409#0 ATCTAATGAAAAAAGTGCCAACGAAGAATTACAAAAGTTGCAAAATTTTTTAAAAGGAGA 297 consensus_1409#1 ACCT-------------------------------------------------------- 208 * ** consensus_1409#0 GAAAAATATCGTTTCCAGAAGTCAAACTGTAGCCAAAGAACCTACATCTTCAGTTTCTAA 357 consensus_1409#1 ------------------------------------------------------------ consensus_1409#0 TATGAGCAATGGTAAAGATAAGATGCTACCAAGTTTTTGGATTCCATCTAAAACACCAGA 417 consensus_1409#1 ------------------------------------------------------------ consensus_1409#0 AGCAAAAGAAACTATGGTACAGAAACCAGATAAAACAATCTATTGTCCTGTTAGTGGAAA 477 consensus_1409#1 ------------------------------------------------------------ consensus_1409#0 ACCATTGAAAATAAAGGATTTAATTTCTGTGAAATTTACTGAAGTAAAAGATCCAGATGA 537 consensus_1409#1 ------------------------------------------------------------ consensus_1409#0 CAAGAAATCTCTTATCGTTAAACA 561 consensus_1409#1 ------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |