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Apis mellifera
cluster # 142 cluster # 142       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_142#0 length = 667 sequences # 5  
consensus_142#1 length = 574 sequences # 2  

consensusID : consensus_142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 667
fasta sequence
                              [ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGTATAACTTGGTTTTTAGCTNATAAACCTGAATATTGTTCTTAATATCTTTTAAACTTGTTCAAATTAAATA]

[+] EMBL BI504716             [ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGTATAACTTGGTTTTTAGCTNATAAACCTGAATATTGTTCTTAATATCTTTTAAACTTGTTCAAATTAAATA]
[+] EMBL BI509527             [ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAA                                                                                                                                                                                                          ]
[+] EMBL BI503131             [ TAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCNNNAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACT                                                                             ]
[+] EMBL BI505153             [                    TGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCAC                                                                                       ]
[+] EMBL BI507203             [                                                CCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGTCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGT                                                                      ]


>consensus_142#0 ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCA CCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGAT GTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTC GTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGC TCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGT ATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGC GGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACT TTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCT GGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAA GTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGTATA ACTTGGTTTTTAGCTNATAAACCTGAATATTGTTCTTAATATCTTTTAAACTTGTTCAAA TTAAATA



consensusID : consensus_142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence
                              [GCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGTAAGCTAATATAAATATATATATAAATATAATTTTTAAGATTGCTTTACGATTAAAATAATATATTTCATAAAAGATGATATAGCTCTAAATAAATTCATAATATTCAATAAAAAAAAAAAAAA]

[+] EMBL BI503888             [GCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGTCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGTAAGCTAATATAAATATATATATAAATATAATTTTTAAGATTGCTTTACGATTAAAATAATATATTTCATAAAAGATGATATAGCTCTAAATAAATTCATAATATTCAATAAAAAAAAAAAAAA]
[+] EMBL BI512723             [GCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCA                                                                                                                                                                                            ]


>consensus_142#1 GCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAA ACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAAT TATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTT TTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATT GGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGAT TGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATA TATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGA AGTTACAGATGAAATGCATACTCATCCTGGTAAGCTAATATAAATATATATATAAATATA ATTTTTAAGATTGCTTTACGATTAAAATAATATATTTCATAAAAGATGATATAGCTCTAA ATAAATTCATAATATTCAATAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_142#0      ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCA 60
consensus_142#1      --------------------------------GCGTATTGCAAAATGTCCGTCAAATTCA 28
                                                     ****************************

consensus_142#0      CCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGAT 120
consensus_142#1      CCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGAT 88
                     ************************************************************

consensus_142#0      GTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTC 180
consensus_142#1      GTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTC 148
                     ************************************************************

consensus_142#0      GTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGC 240
consensus_142#1      GTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGC 208
                     ************** *********************************************

consensus_142#0      TCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGT 300
consensus_142#1      TCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGT 268
                     ************************************************************

consensus_142#0      ATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGC 360
consensus_142#1      ATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGC 328
                     ************************************************************

consensus_142#0      GGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACT 420
consensus_142#1      GGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACT 388
                     ************************************************************

consensus_142#0      TTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCT 480
consensus_142#1      TTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCT 448
                     ************************************************************

consensus_142#0      GGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAA 540
consensus_142#1      GGTA-AGCTAATATAAAT--ATATATATAAATATAATTTTTAAGATTG----CTTTACGA 501
                     **   ** *  *  *  *  *     *   **  ** *  *   ***      *  *  *

consensus_142#0      GTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGTATA 600
consensus_142#1      TTAAAATAATATATTTCATAAAAGATGATATAGCTCTAAATAAATTCATAATATTCAATA 561
                      ***** **** **    *   *     ** *      *  *  ** *  ****   ***

consensus_142#0      ACTTGGTTTTTAGCTNATAAACCTGAATATTGTTCTTAATATCTTTTAAACTTGTTCAAA 660
consensus_142#1      AAAAAAAAAAAAA----------------------------------------------- 574
                     *          *                                                

consensus_142#0      TTAAATA 667
consensus_142#1      -------
                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)