These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 667 fasta sequence [ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGTATAACTTGGTTTTTAGCTNATAAACCTGAATATTGTTCTTAATATCTTTTAAACTTGTTCAAATTAAATA] [+] EMBL BI504716 [ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGTATAACTTGGTTTTTAGCTNATAAACCTGAATATTGTTCTTAATATCTTTTAAACTTGTTCAAATTAAATA] [+] EMBL BI509527 [ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAA ] [+] EMBL BI503131 [ TAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCNNNAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACT ] [+] EMBL BI505153 [ TGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCAC ] [+] EMBL BI507203 [ CCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGTCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAAGTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGT ] consensusID : consensus_142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [GCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGTAAGCTAATATAAATATATATATAAATATAATTTTTAAGATTGCTTTACGATTAAAATAATATATTTCATAAAAGATGATATAGCTCTAAATAAATTCATAATATTCAATAAAAAAAAAAAAAA] [+] EMBL BI503888 [GCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGTCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACTTTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCTGGTAAGCTAATATAAATATATATATAAATATAATTTTTAAGATTGCTTTACGATTAAAATAATATATTTCATAAAAGATGATATAGCTCTAAATAAATTCATAATATTCAATAAAAAAAAAAAAAA] [+] EMBL BI512723 [GCGTATTGCAAAATGTCCGTCAAATTCACCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGATGTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTCGTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGCTCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGTATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGCGGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_142#0 ATAAGAAAAAAAATGCTCGATGTGCAAGAATTGCGTATTGCAAAATGTCCGTCAAATTCA 60 consensus_142#1 --------------------------------GCGTATTGCAAAATGTCCGTCAAATTCA 28 **************************** consensus_142#0 CCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGAT 120 consensus_142#1 CCATGGATCAGACCGGTTAGGATATATTTTAAACAAAATGGCGAACATAAAGATTGGGAT 88 ************************************************************ consensus_142#0 GTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTC 180 consensus_142#1 GTGGTAAAAGCACATGATGGTGTCAATATAATTATTTTCAACGTCAGCCGAAAAAAACTC 148 ************************************************************ consensus_142#0 GTATTTGTTCGTCAGTATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGC 240 consensus_142#1 GTATTTGTTCGTCAATATCGTCCAGCATATTTTTATACATTTATACCGGAGAAATATGGC 208 ************** ********************************************* consensus_142#0 TCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGT 300 consensus_142#1 TCGGTAGATCTTAAACAATATCCACCATCATTGGGTTTAACCTTGGAACTTTGCGCCGGT 268 ************************************************************ consensus_142#0 ATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGC 360 consensus_142#1 ATCGTGGATAAGAATAAACCACTTGTCGAGATTGCAAAAGATGAACTACGAGAAGAATGC 328 ************************************************************ consensus_142#0 GGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACT 420 consensus_142#1 GGATATGAAGCACCATTGGAAGCCTTTAAATATATCATTACTTGCAGGTATGTTTCCACT 388 ************************************************************ consensus_142#0 TTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCT 480 consensus_142#1 TTGGTCTGCAAGCAGACACTTTTCTATGTAGAAGTTACAGATGAAATGCATACTCATCCT 448 ************************************************************ consensus_142#0 GGAGGAGGTTCTGCAGCTGAAGGAGAACTGATCGAAATAGTGGAATTAAGCATTCCAGAA 540 consensus_142#1 GGTA-AGCTAATATAAAT--ATATATATAAATATAATTTTTAAGATTG----CTTTACGA 501 ** ** * * * * * * ** ** * * *** * * * consensus_142#0 GTAAAAGAATACATCAATTCTGAAGAAGTACAAAGTCCACCATGTTTACTATATGGTATA 600 consensus_142#1 TTAAAATAATATATTTCATAAAAGATGATATAGCTCTAAATAAATTCATAATATTCAATA 561 ***** **** ** * * ** * * * ** * **** *** consensus_142#0 ACTTGGTTTTTAGCTNATAAACCTGAATATTGTTCTTAATATCTTTTAAACTTGTTCAAA 660 consensus_142#1 AAAAAAAAAAAAA----------------------------------------------- 574 * * consensus_142#0 TTAAATA 667 consensus_142#1 ------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |