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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1491 cluster # 1491       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1491#0 length = 431 sequences # 1  
consensus_1491#1 length = 348 sequences # 1  

consensusID : consensus_1491#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence
                              [CGTGCGAAATTTGCTTAACAATTATGGGAGTATCGATCCAGCTATCAAAGTATCCGCAAGCGATCCAAATTTATCGACTTACTACAATTAAGAGATTCTGACTATCAAACGCACGATATTGACACGAAATTTGGAACGCTTGACGCGAGATATATATATATATATATATATTTATATATATATATATATATTTTTTTTTTAATAGATTATTGTATCTGCAGAGAATATATATATATATGTATAATGTAACAATCATGAGACACTTTGTTTGGTAACTTAAGTTAGGACTTTTTTTTTTTTTTTAACTTTATTTACAGCTTACAACGAGCAACATCAATCACCCTTCAACTACCTAATGTTTTCGCGATTCGGGCAATTCAATGCGCCTTTGTACACGTTCCACGTACTCCCCTTTTCTTTGGCAATATTAT]

[+] EMBL BI516292             [CGTGCGAAATTTGCTTAACAATTATGGGAGTATCGATCCAGCTATCAAAGTATCCGCAAGCGATCCAAATTTATCGACTTACTACAATTAAGAGATTCTGACTATCAAACGCACGATATTGACACGAAATTTGGAACGCTTGACGCGAGATATATATATATATATATATATTTATATATATATATATATATTTTTTTTTTAATAGATTATTGTATCTGCAGAGAATATATATATATATGTATAATGTAACAATCATGAGACACTTTGTTTGGTAACTTAAGTTAGGACTTTTTTTTTTTTTTTAACTTTATTTACAGCTTACAACGAGCAACATCAATCACCCTTCAACTACCTAATGTTTTCGCGATTCGGGCAATTCAATGCGCCTTTGTACACGTTCCACGTACTCCCCTTTTCTTTGGCAATATTAT]


>consensus_1491#0 CGTGCGAAATTTGCTTAACAATTATGGGAGTATCGATCCAGCTATCAAAGTATCCGCAAG CGATCCAAATTTATCGACTTACTACAATTAAGAGATTCTGACTATCAAACGCACGATATT GACACGAAATTTGGAACGCTTGACGCGAGATATATATATATATATATATATTTATATATA TATATATATATTTTTTTTTTAATAGATTATTGTATCTGCAGAGAATATATATATATATGT ATAATGTAACAATCATGAGACACTTTGTTTGGTAACTTAAGTTAGGACTTTTTTTTTTTT TTTAACTTTATTTACAGCTTACAACGAGCAACATCAATCACCCTTCAACTACCTAATGTT TTCGCGATTCGGGCAATTCAATGCGCCTTTGTACACGTTCCACGTACTCCCCTTTTCTTT GGCAATATTAT



consensusID : consensus_1491#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence
                              [GGCAATTCAATGCGCCTTTGTACACGTTCCACGTACTCCCCTTTTCTTTGGCAATATTATTAAAGAGACGAAGATACACTCTACAACTTTTATATTACGTTAGGCACTAGAAGAATCACAGTCATGAAACTATGACGATACCGCGCGAGCGGTAAGGTCATTAGGTGTATAAAAAAAAAAAAAAAAAGAAGAAGAAATGCTTCAACACACTTCGAGAAATGAGAAGGAATCGAATCAAGATTATCACTGATCGCGGTAATCATTTTATATCGGGGATATCCTCGTCATTCCTNNCTCGAGATCTCTTGACTACTCGATCGCTAAAAAATTACGTAAAGAAAAATTGCG]

[+] EMBL BI515179             [GGCAATTCAATGCGCCTTTGTACACGTTCCACGTACTCCCCTTTTCTTTGGCAATATTATTAAAGAGACGAAGATACACTCTACAACTTTTATATTACGTTAGGCACTAGAAGAATCACAGTCATGAAACTATGACGATACCGCGCGAGCGGTAAGGTCATTAGGTGTATAAAAAAAAAAAAAAAAAGAAGAAGAAATGCTTCAACACACTTCGAGAAATGAGAAGGAATCGAATCAAGATTATCACTGATCGCGGTAATCATTTTATATCGGGGATATCCTCGTCATTCCTNNCTCGAGATCTCTTGACTACTCGATCGCTAAAAAATTACGTAAAGAAAAATTGCG]


>consensus_1491#1 GGCAATTCAATGCGCCTTTGTACACGTTCCACGTACTCCCCTTTTCTTTGGCAATATTAT TAAAGAGACGAAGATACACTCTACAACTTTTATATTACGTTAGGCACTAGAAGAATCACA GTCATGAAACTATGACGATACCGCGCGAGCGGTAAGGTCATTAGGTGTATAAAAAAAAAA AAAAAAAGAAGAAGAAATGCTTCAACACACTTCGAGAAATGAGAAGGAATCGAATCAAGA TTATCACTGATCGCGGTAATCATTTTATATCGGGGATATCCTCGTCATTCCTNNCTCGAG ATCTCTTGACTACTCGATCGCTAAAAAATTACGTAAAGAAAAATTGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1491#0      CGTGCGAAATTTGCTTAACAATTATGGGAGTATCGATCCAGCTATCAAAGTATCCGCAAG 60
consensus_1491#1      -------------------------GGCAAT-TCAATGCGCCTTTGTACACGTTC-CACG 33
                                               ** * * ** ** *  ** *  *    * * ** *

consensus_1491#0      CGATCCAAATTTATCGACTTACTACAATTAAGAGATTCTGACTATCAAACGCACGATATT 120
consensus_1491#1      TACTCCCCTTTTCTTTGGCAATATTATTAAAGAGAC---GAAGATACACTCTACAACTTT 90
                         ***   *** *      *    * * ******    **  **  *    ** *  **

consensus_1491#0      GACACGAAATTTGGAACGCTTGACGCGAGATATATATATATATATATATATTTATATATA 180
consensus_1491#1      TATATTACGTTAGGCACTAGAAGAATCACAGTCATGAAACTATGACGATACCGCGCGAGC 150
                       * *  *  ** ** **          * *   **  *  ***    ***       *  

consensus_1491#0      TATATATATATTTTTTTTTTAATAGATTATTGTATCTGCAGAGAATATATATATATATGT 240
consensus_1491#1      GGTAAGGTCATTAGGTGTATAAAAAAAAAAAAAAAAAGAAGAAGAAATGCTTCAACACAC 210
                        **     ***   * * *** * *  *    *   * ***  * **   *  * *   

consensus_1491#0      ATAATGTAACAATCATGAGACACTTTGTTTGGTAACTTAAGTTAGGACTTTTTTTTTTTT 300
consensus_1491#1      TTCGAGAAATGAGAAGGAATCGAATCA--AGATTATCACTGATCGCGGTAATCATTTTAT 268
                       *   * **  *  * **  *   *     * * *     * * *   *  *  **** *

consensus_1491#0      TTTAACTTTATTTACAGCTTACAACGAGCAACATCAATC-ACCCTTCAACTACCTAATGT 359
consensus_1491#1      ATCGGGGATATCCTCGTCATTCCTNNCTCGAGATCTCTTGACTACTCGATCGCTAAAAAA 328
                       *      ***   *  * * *      * * ***  *  **   ** *   *  **   

consensus_1491#0      TTTCGCGATTCGGGCAATTCAATGCGCCTTTGTACACGTTCCACGTACTCCCCTTTTCTT 419
consensus_1491#1      TTACGTAAA--GAAAAATTGCG-------------------------------------- 348
                      ** **  *   *   ****                                         

consensus_1491#0      TGGCAATATTAT 431
consensus_1491#1      ------------
                                  




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)