These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 767 fasta sequence [TCTTGCGTATTTATCAAAAATAGAAAGAACGTGACAGAATGTCTGTCACTAATCTTAATTCTCAGCAAGAATACGAGAATTATGTTAAGTCACAAGATCTTTCTGTTATTCATTTCTACGCGCCATGGGCTGATCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGCCTACATATCCTCAGTTGTATATAAATGGAGAACTTATTGGAGGATTAGATATTATAAAGGAAATGAGTGAATCTGGAGAGTTAGAAAATATGTTGCCTAAGAAGAGTTAATAAGAGTTAAAGAAAATAAAGCAAAATCAGTCACTATTTTAATATAATTATTTTTAA] [+] EMBL BI510339 [TCTTGCGTATTTATCAAAAATAGAAAGAACGTGACAGAATGTCTGTCACTAATCTTAATTCTCAGCAAGAATACGAGAATTATGTTAAGTCACAAGATCTTTCTGTTATTCATTTCTACGCGCCATGGGCTGATCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTT ] [+] EMBL BI510155 [ GCTGATCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGCCTACATATCCTCAGTTGTATATAAATGGAGAACTTATTGGAGGATTAGATATTATAAAGGAAATGAGTGAATCTGGAGAGTTAGAAAATATGTTGCCTAAGAAGAGTTAATAAGAGTTAAAGAAAATAAAGCAAAATCAGTCACTATTTTAATATAATTATTTTTAA] [+] EMBL BI509473 [ TCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGCCTACATATCCTCAGTTGTATATAAATGGAGAACTTATTGGAGGATTAGATATTATAAAGGAAATGAGTGAATCTGGAGAGTTAGAAAATATGTTGCCTAAGAAGAGTTAATAAGAGTTAAAGAAAATAAAGCAAAATCAGTCACTATTTTAATATAATTATTTTTAA] [+] EMBL BI503013 [ TCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGCCTACATATCCTCAGTTGTATATAAATGGAGAACTTATTGGAGGATTAGATATTATAAAGGAAATGAGTGAATCTGGAGAGTTAGAAAATATGTTGCCTAAGAAGA ] [+] EMBL BI510220 [ TCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGCCTACATATCCTCAGTTGTATATAAATGGAGAACTTATTGGAGGATTAGATATTATAAAGGAAATGAGTGAATCTGGAG ] consensusID : consensus_150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [TCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGCCTACATATCCTCAGTTGTATAAAAATGTATAATATATAGATTGCGAATTTTTGGAAATGAATGTACAATAAT] [+] EMBL BI510190 [TCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAACCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTTTAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCGATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCAAAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAAAAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCACGTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAATCATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGCCTACATATCCTCAGTTGTATAAAAATGTATAATATATAGATTGCGAATTTTTGGAAATGAATGTACAATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_150#0 TCTTGCGTATTTATCAAAAATAGAAAGAACGTGACAGAATGTCTGTCACTAATCTTAATT 60 consensus_150#1 ------------------------------------------------------------ consensus_150#0 CTCAGCAAGAATACGAGAATTATGTTAAGTCACAAGATCTTTCTGTTATTCATTTCTACG 120 consensus_150#1 ------------------------------------------------------------ consensus_150#0 CGCCATGGGCTGATCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAA 180 consensus_150#1 -------------TCAATGTTCGCAGATAAATGATGTGATCGAAGAAATGAGCAAACTAA 47 *********************************************** consensus_150#0 CCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTT 240 consensus_150#1 CCGAGTATAAAGAAGTTAAATTTGCTAAAATCGAAGCTGAAAAAATTCCTGATGTATCTT 107 ************************************************************ consensus_150#0 TAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCG 300 consensus_150#1 TAAAAGCTGGTATCAGTGCAGTACCAACAATTATTTTCACAAGAAACGATACTATACTCG 167 ************************************************************ consensus_150#0 ATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCA 360 consensus_150#1 ATAGAGTCGATGGAGCCAACCCTTCTGCTATAGCAGACAAAATCAAACATCAGTTGTCCA 227 ************************************************************ consensus_150#0 AAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAA 420 consensus_150#1 AAAAAGATTCCATTTCAATTGAAACATATAAACCAAAAGAAAATCTTGAAGAAAGATTAA 287 ************************************************************ consensus_150#0 AAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCAC 480 consensus_150#1 AAAAGTTAATAAATCAAGCACCTTGTATGCTATTCATGAAAGGATCTCCAATAAATCCAC 347 ************************************************************ consensus_150#0 GTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAAT 540 consensus_150#1 GTTGTGGATTTTCTAGAACAATAGTTTCCATTTTAGATTCTTATAAAGCAGACTATCAAT 407 ************************************************************ consensus_150#0 CATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGC 600 consensus_150#1 CATTTGATATTTTACAAGATAATGATGTTAGAGAAGGACTTAAAAAATTTAGTGATTGGC 467 ************************************************************ consensus_150#0 CTACATATCCTCAGTTGTATATAAATGGAGAACTTATTGGAGGATTAGATATTATAAAGG 660 consensus_150#1 CTACATATCCTCAGTTGTATAAAAATGTATAATATAT----AGATTGCGAATTTTT--GG 521 ********************* ***** * ** *** **** *** * ** consensus_150#0 AAATGAGTGAATCTGGAGAGTTAGAAAATATGTTGCCTAAGAAGAGTTAATAAGAGTTAA 720 consensus_150#1 AAATGAATGTACAATAAT------------------------------------------ 539 ****** ** * * consensus_150#0 AGAAAATAAAGCAAAATCAGTCACTATTTTAATATAATTATTTTTAA 767 consensus_150#1 ----------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |