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Apis mellifera
cluster # 1634 cluster # 1634       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1634#0 length = 498 sequences # 1  
consensus_1634#1 length = 462 sequences # 1  

consensusID : consensus_1634#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence
                              [CGTCACAGCACCAGCCTGAGCTCCCACAGCTCGGACAGCGGCGGCACGAATTGCTACCACCACCACCAGCAACCCTCGATGACCGGTTTCTTGACCCACCACGCGAACAAGCTGCACATACTGTCCCCCATCTCCGACAAGTCGTCCCAAGAGCCCGCGTCCGAGACCTCGGACAACAATCGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGAGAACAACGTGACCGCCACGAACAACGTGACCAACACGAACACGAATTCGGTTACCTCGCCGATGGACACGTCGTTCAAGAAGAGGCGGACGCCGCAGAATAAGAATCTGATCAATTTGGTGTTGCAATCCTCGTCGTCGGGCGATGTGGAGATCCAGGGGTCGGACAGCGGGATCTCGATCGAGTCGCGGGCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTTGAAACCGCAATTGGACAATATCAATCTGGTGGACAACGAG]

[+] EMBL BI505581             [CGTCACAGCACCAGCCTGAGCTCCCACAGCTCGGACAGCGGCGGCACGAATTGCTACCACCACCACCAGCAACCCTCGATGACCGGTTTCTTGACCCACCACGCGAACAAGCTGCACATACTGTCCCCCATCTCCGACAAGTCGTCCCAAGAGCCCGCGTCCGAGACCTCGGACAACAATCGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGAGAACAACGTGACCGCCACGAACAACGTGACCAACACGAACACGAATTCGGTTACCTCGCCGATGGACACGTCGTTCAAGAAGAGGCGGACGCCGCAGAATAAGAATCTGATCAATTTGGTGTTGCAATCCTCGTCGTCGGGCGATGTGGAGATCCAGGGGTCGGACAGCGGGATCTCGATCGAGTCGCGGGCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTTGAAACCGCAATTGGACAATATCAATCTGGTGGACAACGAG]


>consensus_1634#0 CGTCACAGCACCAGCCTGAGCTCCCACAGCTCGGACAGCGGCGGCACGAATTGCTACCAC CACCACCAGCAACCCTCGATGACCGGTTTCTTGACCCACCACGCGAACAAGCTGCACATA CTGTCCCCCATCTCCGACAAGTCGTCCCAAGAGCCCGCGTCCGAGACCTCGGACAACAAT CGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGAGAACAACGTG ACCGCCACGAACAACGTGACCAACACGAACACGAATTCGGTTACCTCGCCGATGGACACG TCGTTCAAGAAGAGGCGGACGCCGCAGAATAAGAATCTGATCAATTTGGTGTTGCAATCC TCGTCGTCGGGCGATGTGGAGATCCAGGGGTCGGACAGCGGGATCTCGATCGAGTCGCGG GCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTTGAAACCGCAATTGGACAATATC AATCTGGTGGACAACGAG



consensusID : consensus_1634#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence
                              [GGACAACAATCGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGAGAACAACGTGACCGCCACGAACAACGTGACCAACACGAACACGACCGGGAACACGAATTCGGTTACCTCGCCGATGGACACGTCGTTCAAGAAGAGGCGGACGCCGCAGAACAAGAATCTGATCAATTTGGCGTTGCAATCCTCGTCGTCGGGCGATGCGGAGATCCAGGGGTCGGACAGCGGGATCTCGATCGAGTCGCGGGCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTTGAAACCGCAATTGGACAATATCAATCTGGTGGACAACGAGCCCGAGCTGTCCGATCTTCCTTTCGACATGCCGAAACTGCGTAGAAGGCGATTGCTTATGCAACAGGACGCGACCACATCTGGGAGCGCGACGAGCGTGGATTTGAGGGACTTGCCGAGACA]

[+] EMBL BI516567             [GGACAACAATCGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGAGAACAACGTGACCGCCACGAACAACGTGACCAACACGAACACGACCGGGAACACGAATTCGGTTACCTCGCCGATGGACACGTCGTTCAAGAAGAGGCGGACGCCGCAGAACAAGAATCTGATCAATTTGGCGTTGCAATCCTCGTCGTCGGGCGATGCGGAGATCCAGGGGTCGGACAGCGGGATCTCGATCGAGTCGCGGGCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTTGAAACCGCAATTGGACAATATCAATCTGGTGGACAACGAGCCCGAGCTGTCCGATCTTCCTTTCGACATGCCGAAACTGCGTAGAAGGCGATTGCTTATGCAACAGGACGCGACCACATCTGGGAGCGCGACGAGCGTGGATTTGAGGGACTTGCCGAGACA]


>consensus_1634#1 GGACAACAATCGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGA GAACAACGTGACCGCCACGAACAACGTGACCAACACGAACACGACCGGGAACACGAATTC GGTTACCTCGCCGATGGACACGTCGTTCAAGAAGAGGCGGACGCCGCAGAACAAGAATCT GATCAATTTGGCGTTGCAATCCTCGTCGTCGGGCGATGCGGAGATCCAGGGGTCGGACAG CGGGATCTCGATCGAGTCGCGGGCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTT GAAACCGCAATTGGACAATATCAATCTGGTGGACAACGAGCCCGAGCTGTCCGATCTTCC TTTCGACATGCCGAAACTGCGTAGAAGGCGATTGCTTATGCAACAGGACGCGACCACATC TGGGAGCGCGACGAGCGTGGATTTGAGGGACTTGCCGAGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1634#0      CGTCACAGCACCAGCCTGAGCTCCCACAGCTCGGACAGCGGCGGCACGAATTGCTACCAC 60
consensus_1634#1      ------------------------------------------------------------
                                                                                  

consensus_1634#0      CACCACCAGCAACCCTCGATGACCGGTTTCTTGACCCACCACGCGAACAAGCTGCACATA 120
consensus_1634#1      ------------------------------------------------------------
                                                                                  

consensus_1634#0      CTGTCCCCCATCTCCGACAAGTCGTCCCAAGAGCCCGCGTCCGAGACCTCGGACAACAAT 180
consensus_1634#1      --------------------------------------------------GGACAACAAT 10
                                                                        **********

consensus_1634#0      CGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGAGAACAACGTG 240
consensus_1634#1      CGGAACAACAACTCGCAGAAAGCCTCGCCCGAGGAGAACGTGACCACCGAGAACAACGTG 70
                      ************************************************************

consensus_1634#0      ACCGCCACGAACAACGTGACCAACACGAACACGA------------ATTCGGTTACCTCG 288
consensus_1634#1      ACCGCCACGAACAACGTGACCAACACGAACACGACCGGGAACACGAATTCGGTTACCTCG 130
                      **********************************            **************

consensus_1634#0      CCGATGGACACGTCGTTCAAGAAGAGGCGGACGCCGCAGAATAAGAATCTGATCAATTTG 348
consensus_1634#1      CCGATGGACACGTCGTTCAAGAAGAGGCGGACGCCGCAGAACAAGAATCTGATCAATTTG 190
                      ***************************************** ******************

consensus_1634#0      GTGTTGCAATCCTCGTCGTCGGGCGATGTGGAGATCCAGGGGTCGGACAGCGGGATCTCG 408
consensus_1634#1      GCGTTGCAATCCTCGTCGTCGGGCGATGCGGAGATCCAGGGGTCGGACAGCGGGATCTCG 250
                      * ************************** *******************************

consensus_1634#0      ATCGAGTCGCGGGCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTTGAAACCGCAA 468
consensus_1634#1      ATCGAGTCGCGGGCCGGGATCAAGTGCAAACCGTTCGGTTTCCACTTGTTGAAACCGCAA 310
                      ************************************************************

consensus_1634#0      TTGGACAATATCAATCTGGTGGACAACGAG------------------------------ 498
consensus_1634#1      TTGGACAATATCAATCTGGTGGACAACGAGCCCGAGCTGTCCGATCTTCCTTTCGACATG 370
                      ******************************                              

consensus_1634#0      ------------------------------------------------------------
consensus_1634#1      CCGAAACTGCGTAGAAGGCGATTGCTTATGCAACAGGACGCGACCACATCTGGGAGCGCG 430
                                                                                  

consensus_1634#0      --------------------------------
consensus_1634#1      ACGAGCGTGGATTTGAGGGACTTGCCGAGACA 462
                                                      




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)