These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [GACATTTAGAAGAAATAGTTGCTACACCAGTAGTTATAATAGAACCTGGTGATTCATGCCTTCGATTTCCATCAACATTAAAATTAAATGATTTATACAGTGATTTTAAAATTACTGTTGAAATATATTCGTTGCAAACACAACCCGAAATGTTACCACATGAAATTAAATACCATATTAATAATGGTAATGGAAGTAGTATTAATAGTAATAATTGTAATAAAAAGTTAGCGAATAAAACACCAAAAAAATTTTTAAAACAAGAAAGTAGATTGGTGATGCCTAGTGTGCAAAGCCCAGCTGGACCATCTGCTGTTAGATCTCCAGCTTTTCAACTATCTGGTTATGTTATTTTTAGTTTGAAAGAGATACATCGACAACAA] [+] EMBL BI505122 [GACATTTAGAAGAAATAGTTGCTACACCAGTAGTTATAATAGAACCTGGTGATTCATGCCTTCGATTTCCATCAACATTAAAATTAAATGATTTATACAGTGATTTTAAAATTACTGTTGAAATATATTCGTTGCAAACACAACCCGAAATGTTACCACATGAAATTAAATACCATATTAATAATGGTAATGGAAGTAGTATTAATAGTAATAATTGTAATAAAAAGTTAGCGAATAAAACACCAAAAAAATTTTTAAAACAAGAAAGTAGATTGGTGATGCCTAGTGTGCAAAGCCCAGCTGGACCATCTGCTGTTAGATCTCCAGCTTTTCAACTATCTGGTTATGTTATTTTTAGTTTGAAAGAGATACATCGACAACAA] consensusID : consensus_1756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [AGTAAAAAGGTATTAGGACGCGCACAAATATCACGAGAAACTAATCCAACATTTGTTGTATTAACACCTTGTAAATCTAAACTTCCAATTGGAGTCTTTTTTCGCTCCAACATCAGAATATTTCCAATATGATAAAGTAGAACCTTTAAGTAAACACCATCTACGATGCCAAGCACCAAAACCAGATATATCTTCAAACATTGTAAGAAATCCTCTATGTTCAACTGCTACCGAAAGTTCACATGAAACATGCATTTGTAATCGACCTTCTAGTGGGGATTGCGATGGTACCTTATTAAGCGTGAATTGTTGTCGATGTATCTCTTTCAAACTAAAAATAACATAACCAGA] [+] EMBL BI510185 [AGTAAAAAGGTATTAGGACGCGCACAAATATCACGAGAAACTAATCCAACATTTGTTGTATTAACACCTTGTAAATCTAAACTTCCAATTGGAGTCTTTTTTCGCTCCAACATCAGAATATTTCCAATATGATAAAGTAGAACCTTTAAGTAAACACCATCTACGATGCCAAGCACCAAAACCAGATATATCTTCAAACATTGTAAGAAATCCTCTATGTTCAACTGCTACCGAAAGTTCACATGAAACATGCATTTGTAATCGACCTTCTAGTGGGGATTGCGATGGTACCTTATTAAGCGTGAATTGTTGTCGATGTATCTCTTTCAAACTAAAAATAACATAACCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1756#0 GACATTTAGAAGAAATAGTTGCTACACCAGTAGTTATAAT-AGAACCTGGTGATTCATGC 59 consensus_1756#1 ------AGTAAAAAGGTATTAGGACGCGCACAAATATCACGAGAAACTAATCCAACATTT 54 ** ** ** ** * * *** * **** ** * *** consensus_1756#0 CTTCGATTTCCATCAACATTAAAATTAAATGATTTATACAGTGATTTTAAAATTACTGTT 119 consensus_1756#1 GTTGTATTAACACC--TTGTAAATCTAAAC--TTCCAATTGGAGTCTT----TTTTCGCT 106 ** *** ** * **** **** ** * * * ** ** * * consensus_1756#0 GAAATATATTCGTTGCAAACACAACCCGAAATGTTACCACATGAAATTAAATACCATAT- 178 consensus_1756#1 CCAACA---TCAGAATATTTCCAATATGATAAAGTAGAACCTTTAAGTAAACACCATCTA 163 ** * ** * *** ** * ** ** * ** **** ***** * consensus_1756#0 TAATAATG-GTAATGGAAGTAGTATTAATAGTAATAATTGTAATAAAAAGTTAGCGAATA 237 consensus_1756#1 CGATGCCAAGCACCAAAACCAGATATATCTTCAAACATTGTAAGAAATCCTCTATGT-TC 222 ** * * ** ** ** ** ******* *** * * * consensus_1756#0 AAACACCAAAAAAATTTTTAAAACAAGAAA-GTAGATTGGTGATGCCTAGTGTGCAAAGC 296 consensus_1756#1 AACTGCTACCGAAAGTTC----ACATGAAACATGCATTTGTAAT----------CGACCT 268 ** * * *** ** *** **** * *** ** ** * * consensus_1756#0 CCAGCTGGACCATCTGCTGTTAGATCTCCAGCTTTTCAACTATCTGGTTATGTTATTTTT 356 consensus_1756#1 TCTAGTGGGGATTGCGATGGTACCTTATTAAGCGTGAATTGTTGTCGATGTATCTCTTTC 328 * *** * * ** ** * * * * * * * * * * *** consensus_1756#0 AGTTTGAAAGAGATACATCGACAACAA 383 consensus_1756#1 AAACTAAAAATAACATAACCAGA---- 351 * * *** * * * * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |