These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence [GATTATTGTCATCGTTTCTGTGACTATCGATAGTTCTGTAAGTTTGGAATTTCTACCGATGATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTACAACAACAAAATGATATGATGAGACAACAAGATGAGCAACTAGATATGATAGGTGAAAGCATTGGAACA] [+] EMBL BI513598 [GATTATTGTCATCGTTTCTGTGACTATCGATAGTTCTGTAAGTTTGGAATTTCTACCGATGATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTNNNAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGAT ] [+] EMBL BI510371 [ TACCGATGATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGAAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTACAACAACAAAATGATATGATGAGACAACAAGATGAGCAACTAGATATGATAGGTGAAAGCATTGGAACA] [+] EMBL BI510150 [ ACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTACAACAACAAAATGATATGATGA ] [+] EMBL BI512343 [ ACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATA ] [+] EMBL BI514234 [ TATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGNGGTCGGGATCGTGATAACACAGCAAGACAGCCACTTTTAGA ] consensusID : consensus_180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [CATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTATGTATGTATGTGTATATATACGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCTACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAA] [+] EMBL BI515861 [CATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACCTCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAGTTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATGTTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGACTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAGACACAATTTATGTATGTATGTGTATATATACGTATTGTAGAAAAAAATCCAACAAAGTTTAAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAAGTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCAAGACAGCTACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAATATAGCAAATTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_180#0 GATTATTGTCATCGTTTCTGTGACTATCGATAGTTCTGTAAGTTTGGAATTTCTACCGAT 60 consensus_180#1 ------------------------------------------------------------ consensus_180#0 GATCGACAAATTGCATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACC 120 consensus_180#1 -------------CATATACGTATTTCTGTGGGTGCCGTGAGGCGGCGAGAAAGGCCACC 47 *********************************************** consensus_180#0 TCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAG 180 consensus_180#1 TCTTTAAATTAAAAGAAGGAATGACGCTAGAGAATCCGTTCTTTGTCGTCAAGGACGAAG 107 ************************************************************ consensus_180#0 TTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATG 240 consensus_180#1 TTTGTAAAGCTTTAAATAAAAATCGCGGTTTATACGGGCGCTGGACGGAATTGCAGGATG 167 ************************************************************ consensus_180#0 TTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGA 300 consensus_180#1 TTGTCACGAGTCCTACTGTGAGTGGGGGAATCCCAATCTCACGCGACGAATTAGAGTGGA 227 ************************************************************ consensus_180#0 CTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAG 360 consensus_180#1 CTACTACTGAATTACGGAAAGCTTTACGTTCAATCGAATGGGATCTTGATGATTTAGAAG 287 ************************************************************ consensus_180#0 ACACAATTT----------------------GTATTGTAGAAAAAAATCCAACAAAGTTT 398 consensus_180#1 ACACAATTTATGTATGTATGTGTATATATACGTATTGTAGAAAAAAATCCAACAAAGTTT 347 ********* ***************************** consensus_180#0 AAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAA 458 consensus_180#1 AAAATAGATAACAAAGAATTAACGGTTCAACGAAGTTTTATCGAACAAACTCGAGAAGAA 407 ************************************************************ consensus_180#0 GTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCA 518 consensus_180#1 GTTAAGACCATGAAAGATAAAATGAATTTAAGTAGAGGTCGGGATCGTGATAACACAGCA 467 ************************************************************ consensus_180#0 AGACAGCCACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAA 578 consensus_180#1 AGACAGCTACTTTTAGATAATAGTCCTGCTCGAGTTCCTGTCAATCATGGCACAACAAAA 527 ******* **************************************************** consensus_180#0 TATAGCAAATTGGAAAATGAAATTGATAGTCCAAATAGACAATTTTTAGGAGATACCTTA 638 consensus_180#1 TATAGCAAATTGGAA--------------------------------------------- 542 *************** consensus_180#0 CAACAACAAAATGATATGATGAGACAACAAGATGAGCAACTAGATATGATAGGTGAAAGC 698 consensus_180#1 ------------------------------------------------------------ consensus_180#0 ATTGGAACA 707 consensus_180#1 --------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |