These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 581 fasta sequence [GCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATAATCAAAGAACGTCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATAGATGAAAAGTTAACGAATGAGAATAATCACGATACAGTGAGTATAT] [+] EMBL BI506598 [GCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATA ] [+] EMBL BI503252 [ GCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATAATCAAAGAACGTCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATAGATGAAAAGTTAACGAATGAGAATAATCACGATACAGTGAGTATAT] [+] EMBL BI508309 [ GCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATAATCAAAGAACGTCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATAGATGAAAAGTTAACGAATGAGAATAATCACGATACAGT ] consensusID : consensus_182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 567 fasta sequence [ACGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTCTGTGGTTTTCTACTAATGGCAAGCAATATCCCAATAATGGC] [-] EMBL BI506713 [ACGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGT ] [-] EMBL BI503965 [ CGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATNNNNGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTCTGTGGTTTTCTACTAATGGCAAGCAAT ] [+] EMBL BI508878 [ TCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTGCCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTCTGTGGTTTTCTACTAATGGCAAGCAATATCCCAATAATGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_182#0 --GCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATC 58 consensus_182#1 ACGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATC 60 ********************************************************** consensus_182#0 GACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGA 118 consensus_182#1 GACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGA 120 ************************************************************ consensus_182#0 CGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAA 178 consensus_182#1 CGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAA 180 ************************************************************ consensus_182#0 CACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGT 238 consensus_182#1 CACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGT 240 ************************************************************ consensus_182#0 GTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATT 298 consensus_182#1 GTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATT 300 ************************************************************ consensus_182#0 CCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTG 358 consensus_182#1 CCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTG 360 ************************************************************ consensus_182#0 TTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTG 418 consensus_182#1 TTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATC--ATCCAGACGGTGAATCTG 418 ********************************* * *** ** * ** * * ** consensus_182#0 ATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTA 478 consensus_182#1 A----------CGAGAGTTAGGAT-GCTCAGCTTGAAGATGAGGTATATATTCACGGTGA 467 * *** * * ** * *** *** * ** * * * * * * consensus_182#0 TTGATAATCAAAGA-ACG--TCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATA 535 consensus_182#1 C-GGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTC 526 * **** ** *** * * ** ***** * **** * * * consensus_182#0 GATGAAAAGTTAACGAATGAGAATAATCACGATACAGTGAGTATAT 581 consensus_182#1 TGTGGTTTTCTACTAATGGCAAGCAATATCCCAATAATGGC----- 567 ** ** * * * *** * * * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |