These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 571 fasta sequence [TTTGTTTCTGTTGTGAATAATTAAGCCCCGGATCATCGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGAATGGCACGTGGACAACAGAAAATTCAATCACAAGCCAAAGCAGCTGAGAAAGCTGCAAAAGTAAAAAAACAACAAGGACATAGTGCTAATGAGCAAAAAAAGGCTGCACAGAAAGCTTTAGTTCATGTGTGCATAGTTTGTAAGGCACAAATGCCAGATCCAAAGACGTATAAACAACATTTTGAGAATAAACATCCTAAGAATGATTTACCAGAAGATTTAAAAAATATATGAGAGTAACATGTTGCACAAGCATGCAGGTTGGGATGGAGAGAGCAACAAAAAAATTATTACAAATGACAAAGTGATATAGTTCAACATTCAACTATTAAATAGTCACAAACAAGAAAAATAAATTAAATCTTGTTAGTGTTTAAAATGAACTATCGCACAGTTAACAATTGAATTTTTGTGCACAGCTCCAAATTGTAATATTATTGATAATTCATTTGTAAAACAAAATTGTTCATTTTTTTCCAAAGATAC] [+] EMBL BI514056 [TTTGTTTCTGTTGTGAATAATTAAGCCCCGGATCATCGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGAATGGCACGTGGACAACAGAAAATTCAATCACAAGCCAAAGCAGCTGAGAAAGCTGCAAAAGTAAAAAAACAACAAGGACATAGTGCTAATGAGCAAAAAAAGGCTGCACAGAAAGCTTTAGTTCATGTGTGCATAGTTTGTAAGGCACAAATGCCAGATCCAAAGACGTATAAACAACATTTTGAGAATAAACATCCTAAGAATGATTTACCAGAAGATTTAAAAAATATATGAGAGTAACATGTTGCACAAGCATGCAGGTTGGGATGGAGAGAGCAACAAAAAAATTATTACAAATGACAAAGTGATATAGTTCAACATTCAACTATTAAATAGTCACAAACAAGAAAAATAAATTAAATCTTGTTAGTGTTTAAAATGAACTATCGCACAGTTAACAATTGAATTTTTGTGCACAGCTCCAAATTGTAATATTATTGATAATTCA ] [+] EMBL BI514106 [TTTGTTTCTGTTGTGAATAATTAAGCCCCGGATCATCGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGAATGGCACGTGGACAACAGAAAATTCAATCACAAGCCAAAGCAGCTGAGAAAGCTGCAAAAGTAAAAAAACAACAAGGACATAGTGCTAATGAGCAAAAAAAGGCTGCACAGAAAGCTTTAGTTCATGTGTGCATAGTTTGTAAGGCACAAATGCCAGATCCAAAGACGTATAAACAACATTTTGAGAATAAACATCCTAAGAATGATTTACCAGAAGATTTAAAAAATATATGAGAGTAACATGTTGCACAAGCATGCAGGTTGGGATGGAGAGAGCAACAAAAAAATTATTACAAATGACAAAGTGATATAGTTCAACATTCAACTATTAAATAGTCACAAACAAGAAA ] [+] EMBL BI514464 [ CCGGATCATCGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGAATGGCACGTGGACAACAGAAAATTCAATCACAAGCCAAAGCAGCTGAGAAAGCTGCAAAAGTAAAAAAACAACAAGGACATAGTGCTAATGAGCAAAAAAAGGCTGCACAGAAAGCTTTAGTTCATGTGTGCATAGTTTGTAAGGCACAAATGCCAGATCCAAAGACGTATAAACAACATTTTGAGAATAAACATCCTAAGAATGATTTACCAGAAGATTTAAAAAATATATGAGAGTAACATGTTGCACAAGCATGCAGGTTGGGATGGAGAGAGCAACAAAAAAATTATTACAAATGACAAAGTGATATAGTTCAACATTCAACTATTAAATAGTCACAAACAAGAAAAATAAATTAAATCTTGTTAGTGTTTAAAATGAACTATCGCACAGTTAACAATTGAATTTTTGTGCACAGCTCCAAATTGTAATATTATTGATAATTCATTTGTAAAACAAAATTGTTCATTTTTTTCCAAAGATAC] [+] EMBL BI511671 [ GCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGAATGGCACGTGGACAACAGAAAATTCAATCACAAGCCAAAGCAGCTGAGAAAGCTGCAAAAGTAAAAAAACAACAAGGACATAGTGCTAATGAGCAAAAAAAGGCTGCACAGAAAGCTTTAGTTCATGTGTGCATAGTTTGTAAGGCACAAATGCCAGATCCAAAGACGTATAAACAACATTTTGAGAATAAACATCCTAAGAATGATTTACCAGAAGATTTAAAAAATATATGAGAGTAACATGTTGCACAAGCATGCAGGTTGGGATGGAGAGAGCAACAAAAAAATTATTACAAATGACAAAGTGATATAGTTCAACATTCAACTATTAAATAGTCACAAACAAGAAAAATAAATTAAATCTTGTTAGTGTTTAAAATGAACTATCGCACAGTTAACAATTGAATTTTTGTGCACAGCTCCAAATTGTAATATTATTGATAATTCATTTGTAAAACAA ] consensusID : consensus_187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence [TTATTTGAAAGGCAGTACTTCACGTACGGATGCTCGAAGATTGCTCGTTCTAATAGATGTGCTGTGAGCACTGCTTTCGATTACTCCGTTTTCTTTGCAAATCATTTTCTTAATTAATTTCAACTATACAACAAAATACAGGAACAAAATTTTTTTGTTTCTGTTGTGAATAATTAAGCCCCGGATCATCGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGGTGAGCGACCTATTTTTTGCAAACTACTTTGTCTAAAAAAATAATTTTTTGCTCTCGCTTATTGTAAATTTCTTCGAAAATTTAATTTGACTATTTTGTATTGCTGTTTTTTGCTTACACACGCTTGATAATATAAATTAAACCAATAATATCGCGGGCAATCTTTGGCACCTCAGTCACCTATTTTATAGGTTGGGTTTATAATCTCGGCGAAGTGAAAGTACGTAATAATAGTCTATTAAAGAGAAAGGATTGAAGATTATACAGTCGAATGAAGATGCACGTTGTCAACGTGCATCTTCATTCAAAAAAAA] [+] EMBL BI513146 [TTATTTGAAAGGCAGTACTTCACGTACGGATGCTCGAAGATTGCTCGTTCTAATAGATGTGCTGTGAGCACTGCTTTCGATTACTCCGTTTTCTTTGCAAATCATTTTCTTAATTAATTTCAACTATACAACAAAATACAGGAACAAAATTTTTTTGTTTCTGTTGTGAATAATTAAGCCCCGGATCATCGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGGTGAGCGACCTATTTTTTGCAAACTACTTTGTCTAAAAAAATAATTTTTTGCTCTCGCTTATTGTAAATTTCTTCGAAAATTTAATTTGACTATTTTGTATTGCTGTTTTTTGCTTACACACGCTTGATAATATAAATTAAACCAATAATATCGCGGGCAATCTTTGGCACCTCAGTCACCTATTTTATAGGTTGGGTTTATAATCTCGGCGAAGTGAAAGTACGTAATAATAGTCTATTAAAGAGAAAGGATTGAAGATTATACAGTCGAATGAAGATGCACGTTGTCAACGTGCATCTTCATTCAAAAAAAA] [+] EMBL BI513187 [TTATTTGAAAGGCAGTACTTCACGTACGGATGCTCGAAGATTGCTCGTTCTAATAGATGTGCTGTGAGCACTGCTTTCGATTACTCCGTTTTCTTTGCAAATCATTTTCTTAATTAATTTCAACTATACAACAAAATACAGGAACAAAATTTTTTTGTTTCTGTTGTGAATAATTAAGCCCCGGATCATCGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGGTGAGCGACCTATTTTTTGCAAACTACTTTGTCTAAAAAAATAATTTTTTGCTCTCGCTTATTGTAAATTTCTTCGAAAATTTAATTTGACTATTTTGTATTGCTGTTTTTTGCTTACACACGCTTGATAATATAAATTAAACCAATAATATCGCGGGCAATCTTTGGCACCTCAGTCACCTATTTTATAGGTTGGGTTTATAATCTCGGCGAAGTGAAAGTACGTAATAATAGTCTATTAAAGAGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_187#0 -------------TTTGTTTCTGTTGTGAATAATTAAGCCCCGGATCATCGAAATAGCAA 47 consensus_187#1 TTATTTGAAAGGCAGTACTTCACGTACGGATGCTCGAAGATTGC-TCGTTCTAATAGATG 59 * *** * * ** * * * ** * ***** consensus_187#0 ----GAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGAATGGCACGTGGACAACAG 103 consensus_187#1 TGCTGTGAGCACTGCTTTCGATTACTCCGTTTTCTTTGCAAATCATTTTCTTAATTAATT 119 * ** ****** * *** * * ** * * * * consensus_187#0 AAAATTCAATCACAAGCCAAAGCAGCTGAGAAA----GCTGCAAAAGTAAAAAAACAACA 159 consensus_187#1 TCAACTATACAACAAAATACAGGAACAAAATTTTTTTGTTTCTGTTGTGAATAATTAAGC 179 ** * * **** * ** * * * * * * ** ** ** ** consensus_187#0 AGGACATAGTGCTAATGAGCAAAAAAAGGCTGCAC--AGAAAGCTTTAGTTC---ATGTG 214 consensus_187#1 CCCGGATCAT-CGAAATAGCAAGAGAATCTTGCTTTTAAATACGTTTATCTTGGGACAGG 238 ** * * ** ***** * ** *** * * * **** * * * consensus_187#0 TGCATAGTTTGTAAGGCACAAA-TGCCAGATCCAAAGACGTATAAACAACATTTTGAGAA 273 consensus_187#1 TGAGCGACCTATTTTTTGCAAACTACTTTGTCTAAAAA------AATAATTTTTTGCTCT 292 ** * * **** * * ** *** * ** ** ***** consensus_187#0 TAAACATCCTAAGAATGATTTACCAGAAGATTTAAAAAATATATGAGAGTAACATGTTGC 333 consensus_187#1 CGCTTATTGTAAATTTCTTCGAAAATTTAATTTGACTATTTTGT-ATTGCTGTTTTTTGC 351 ** *** * * * * **** * * * * * * * * **** consensus_187#0 ACAAGCATGCAGGTTGGGATGGAG-AGAGCAACAAAA----AAATTATTACAAATGACAA 388 consensus_187#1 TTACACACGCTTGATAATATAAATTAAACCAATAATATCGCGGGCAATCTTTGGCACCTC 411 * ** ** * * ** * * * *** ** * ** * consensus_187#0 AGTGATATAGTTCAACATTCAACTATTAAATAGTCACAAACAAGAAAAATAAATTAAATC 448 consensus_187#1 AGTCACCTATTTTATAGGTTGGGTTT---ATAATCTCGGCGAAGTGAAAGTACGTAATAA 468 *** * ** ** * * * * *** ** * *** *** * *** consensus_187#0 TTGTTAGTGTTTAAAATGAACTATCGCACAGTTAACAATTGAATTTTTGTGCACAGCTCC 508 consensus_187#1 TAGTC--TATTAAAGAGAAAGGATTGAAGATTATACAGTCGAATGAAGATGCACGTTGTC 526 * ** * ** ** * ** ** * * * * *** * **** ***** * consensus_187#0 AAATTGTAATATTATTGATAATTCATTTGTAAAACAAAATTGTTCATTTTTTTCCAAAGA 568 consensus_187#1 AACGTGCATCTTCATTCAAAAAAAA----------------------------------- 551 ** ** * * *** * ** * consensus_187#0 TAC 571 consensus_187#1 --- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |