These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [GCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTAAAAAAAGGCAACAACGAGTATTAATGATATTAGATAGCAAAAATGTAGAATACGAAACAATTGATATAACGGAACCAGGGAAAGAAATGGAAAAAGAATTTATGCAAGCTAATAGTATCGCGAGAGAAAGTAAATATCCATTACCTCCACAAATATTTAATGAAGAAGAATATTGCGGGGATTATGAAGATTTTGATTTGGCAAATGAAATAGATGAATTGGAAGAATTTTTAAAAGTAGCACC] [+] EMBL BI509190 [GCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTAAAAAAAGGCAACAACGAGTATTAATGATATTAGATAGCAAAAATGTAGAATACGAAACAATTGATATAACGGAACCAGGGAAAGAAATGGAAAAAGAATTTATGCAAGCTAATAGTATCGCGAGAGAAAGTAAATATCCATTACCTCCACAAATATTTAATGAAGAAGAATATTGCGGGGATTATGAAGATTTTGATTTGGCAAATGAAATAGATGAATTGGAAGAATTTTTAAAAGTAGCACC] consensusID : consensus_1872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [ATGACGTAGCTAGTGGATCCCAGACTAGCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTGAGTGCGAAAAACTAAAGAATATAAAAATATTTTATCCGAGAGCTAGGAACAAAAAAGAAGAGAGAATGTGTGTGTGTGTATGTGAATTCGTATATGTATGTGACTTGAATGCCAGATTTACCGGGCACCTGAATTCTAACGATATTTCACGTCTACGTTGTATCGGATT] [+] EMBL BI511251 [ATGACGTAGCTAGTGGATCCCAGACTAGCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTGAGTGCGAAAAACTAAAGAATATAAAAATATTTTATCCGAGAGCTAGGAACAAAAAAGAAGAGAGAATGTGTGTGTGTGTATGTGAATTCGTATATGTATGTGACTTGAATGCCAGATTTACCGGGCACCTGAATTCTAACGATATTTCACGTCTACGTTGTATCGGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1872#0 ---------------------------GCCCGTGCGTGTTAAATCAGTGTTGCTCACCGT 33 consensus_1872#1 ATGACGTAGCTAGTGGATCCCAGACTAGCCCGTGCGTGTTAAATCAGTGTTGCTCACCGT 60 ********************************* consensus_1872#0 TGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAAC 93 consensus_1872#1 TGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAAC 120 ************************************************************ consensus_1872#0 CGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATC 153 consensus_1872#1 CGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATC 180 ************************************************************ consensus_1872#0 GACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTAAAAA 213 consensus_1872#1 GACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTGAGTG 240 ******************************************************* * consensus_1872#0 AAGGCAAC-AACGAGTATTAATGATATTAGATAGCAAAAATGTAGAATACGAAACAATTG 272 consensus_1872#1 CGAAAAACTAAAGAATATAAA-AATATTTTATC-CGAGAGCTAGGAACAAAAAAGAAGAG 298 *** ** ** *** ** ***** ** * * * *** * *** ** * consensus_1872#0 ATATAACGGAACCAGGGAAAGAAATGGAAAAAGAATTTATGCAAGCTAATAGTATCGCGA 332 consensus_1872#1 A-------GAATGTGTGTGTGTGTATGTGAATTCGTATATGTATGTGACTTGAAT-GCCA 350 * *** * * * * ** * **** * * * * * ** ** * consensus_1872#0 GAGAAAGTAAATATCCATTACCTCCACAAATATTTAATGAAGAAGAATATTGCGGGGATT 392 consensus_1872#1 GATTTACCGGGCACCTG--AATTCTAACGATATTTCACGTCTACGT-TGTATCG--GATT 405 ** * * * * ** * ****** * * * * * * ** **** consensus_1872#0 ATGAAGATTTTGATTTGGCAAATGAAATAGATGAATTGGAAGAATTTTTAAAAGTAGCAC 452 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 C 453 consensus_1872#1 - |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |