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Apis mellifera
cluster # 1907 cluster # 1907       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1907#0 length = 548 sequences # 1  
consensus_1907#1 length = 452 sequences # 1  

consensusID : consensus_1907#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [TTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTGAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGAACGGACAGCAAAAATGTTTACACAAAGGCGAAACAAAAGGCATTACCGTACTTCCTACAGGTCATGTATAAATAGGCACAGTTGCCATTCCGATTTGGAGGCAGATGACGAGGAATTCGATTCCTTGAATCAGTCTGACAGTGTCAATCAATCAGACCATGGAAATCATGAACCACAATCCTCTGTGAATGCTACGAATCAACCAAGACTGTCTACTCCAACAGGAGACAATCCACACGAATTGAT]

[+] EMBL BI504684             [TTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTGAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGAACGGACAGCAAAAATGTTTACACAAAGGCGAAACAAAAGGCATTACCGTACTTCCTACAGGTCATGTATAAATAGGCACAGTTGCCATTCCGATTTGGAGGCAGATGACGAGGAATTCGATTCCTTGAATCAGTCTGACAGTGTCAATCAATCAGACCATGGAAATCATGAACCACAATCCTCTGTGAATGCTACGAATCAACCAAGACTGTCTACTCCAACAGGAGACAATCCACACGAATTGAT]


>consensus_1907#0 TTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAG AGACTGCTTTCCGCGCTCTTTTATACGTTGAATCGCGATTGACCGCGAGTGTTAACGGAT ATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCAC TTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACT TGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAA GAACGGACAGCAAAAATGTTTACACAAAGGCGAAACAAAAGGCATTACCGTACTTCCTAC AGGTCATGTATAAATAGGCACAGTTGCCATTCCGATTTGGAGGCAGATGACGAGGAATTC GATTCCTTGAATCAGTCTGACAGTGTCAATCAATCAGACCATGGAAATCATGAACCACAA TCCTCTGTGAATGCTACGAATCAACCAAGACTGTCTACTCCAACAGGAGACAATCCACAC GAATTGAT



consensusID : consensus_1907#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence
                              [TGCGCGAATGTATCTTTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTCAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGTAAGTGCGTGTGATTTTCACTTTTTAATAAAAAAATATTCTGTTCACTTATTNNGAAACGCGGTTAAATGTCGATCGTATGTAATAGAGAAATTATGTATGTATGTGTAACTACGCATGTTTCAGGAACGGACAGC]

[+] EMBL BI512749             [TGCGCGAATGTATCTTTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTCAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGTAAGTGCGTGTGATTTTCACTTTTTAATAAAAAAATATTCTGTTCACTTATTNNGAAACGCGGTTAAATGTCGATCGTATGTAATAGAGAAATTATGTATGTATGTGTAACTACGCATGTTTCAGGAACGGACAGC]


>consensus_1907#1 TGCGCGAATGTATCTTTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAG TAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTCAATCGCGATTGACCG CGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGT AATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAA GATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGAT CATGAACTCATAGAAGTAAGTGCGTGTGATTTTCACTTTTTAATAAAAAAATATTCTGTT CACTTATTNNGAAACGCGGTTAAATGTCGATCGTATGTAATAGAGAAATTATGTATGTAT GTGTAACTACGCATGTTTCAGGAACGGACAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1907#0      ---------------TTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAG 45
consensus_1907#1      TGCGCGAATGTATCTTTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAG 60
                                     *********************************************

consensus_1907#0      TAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTGAATCGCGATTGACCG 105
consensus_1907#1      TAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTCAATCGCGATTGACCG 120
                      ******************************************** ***************

consensus_1907#0      CGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGT 165
consensus_1907#1      CGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGT 180
                      ************************************************************

consensus_1907#0      AATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAA 225
consensus_1907#1      AATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAA 240
                      ************************************************************

consensus_1907#0      GATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGAT 285
consensus_1907#1      GATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGAT 300
                      ************************************************************

consensus_1907#0      CATGAACTCATAGAAGAACGGACAGCAAAAATGTTTACACAAAGGCGAAACAAAAGGCAT 345
consensus_1907#1      CATGAACTCATAGAAGTAAGTGCGT--GTGATTTTCACTTTTTAATAAAAAAATATTCTG 358
                      **************** * *  *       ** ** **         *** ** *  *  

consensus_1907#0      TACCGTACTTCCTACAGGTCATGTATAAATAGGCACAGT-TGCCATTCCGATTTGGAGGC 404
consensus_1907#1      TTC---ACTTATTNNGAAACGCGGTTAAATGTCGATCGTATGTAATAGAGAAATT-ATGT 414
                      * *   ****  *      *  *  *****    *  ** **  **   **  *  * * 

consensus_1907#0      AGATGACGAGGAATTCGATTCCTTGAATCAGTCTGACAGTGTCAATCAATCAGACCATGG 464
consensus_1907#1      ATGTATGTGTAACTACGCATGTTTCAGGAA--CGGACAGC-------------------- 452
                      *  *       * * **  *  ** *   *  * *****                     

consensus_1907#0      AAATCATGAACCACAATCCTCTGTGAATGCTACGAATCAACCAAGACTGTCTACTCCAAC 524
consensus_1907#1      ------------------------------------------------------------
                                                                                  

consensus_1907#0      AGGAGACAATCCACACGAATTGAT 548
consensus_1907#1      ------------------------
                                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)