These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [TTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTGAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGAACGGACAGCAAAAATGTTTACACAAAGGCGAAACAAAAGGCATTACCGTACTTCCTACAGGTCATGTATAAATAGGCACAGTTGCCATTCCGATTTGGAGGCAGATGACGAGGAATTCGATTCCTTGAATCAGTCTGACAGTGTCAATCAATCAGACCATGGAAATCATGAACCACAATCCTCTGTGAATGCTACGAATCAACCAAGACTGTCTACTCCAACAGGAGACAATCCACACGAATTGAT] [+] EMBL BI504684 [TTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTGAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGAACGGACAGCAAAAATGTTTACACAAAGGCGAAACAAAAGGCATTACCGTACTTCCTACAGGTCATGTATAAATAGGCACAGTTGCCATTCCGATTTGGAGGCAGATGACGAGGAATTCGATTCCTTGAATCAGTCTGACAGTGTCAATCAATCAGACCATGGAAATCATGAACCACAATCCTCTGTGAATGCTACGAATCAACCAAGACTGTCTACTCCAACAGGAGACAATCCACACGAATTGAT] consensusID : consensus_1907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [TGCGCGAATGTATCTTTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTCAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGTAAGTGCGTGTGATTTTCACTTTTTAATAAAAAAATATTCTGTTCACTTATTNNGAAACGCGGTTAAATGTCGATCGTATGTAATAGAGAAATTATGTATGTATGTGTAACTACGCATGTTTCAGGAACGGACAGC] [+] EMBL BI512749 [TGCGCGAATGTATCTTTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAGTAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTCAATCGCGATTGACCGCGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGTAATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAAGATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGATCATGAACTCATAGAAGTAAGTGCGTGTGATTTTCACTTTTTAATAAAAAAATATTCTGTTCACTTATTNNGAAACGCGGTTAAATGTCGATCGTATGTAATAGAGAAATTATGTATGTATGTGTAACTACGCATGTTTCAGGAACGGACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1907#0 ---------------TTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAG 45 consensus_1907#1 TGCGCGAATGTATCTTTCTAGAAAATTATATATTAGACACACACAGAATGTATAACAAAG 60 ********************************************* consensus_1907#0 TAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTGAATCGCGATTGACCG 105 consensus_1907#1 TAGCATTGCACTTAGAGACTGCTTTCCGCGCTCTTTTATACGTTCAATCGCGATTGACCG 120 ******************************************** *************** consensus_1907#0 CGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGT 165 consensus_1907#1 CGAGTGTTAACGGATATTGGTAAAAGTTTTGTGTGCAAACCCGTTGTTACTCCGCAATGT 180 ************************************************************ consensus_1907#0 AATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAA 225 consensus_1907#1 AATTTCGTTAGCCACTTAATTCTACAGAGTACAGGAGGTAGTACAGGAGAAGATGAGGAA 240 ************************************************************ consensus_1907#0 GATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGAT 285 consensus_1907#1 GATCTTAGTGGCACTTGTCTTGAAACTAAACACAACACACATCACAATGAGTTCCTTGAT 300 ************************************************************ consensus_1907#0 CATGAACTCATAGAAGAACGGACAGCAAAAATGTTTACACAAAGGCGAAACAAAAGGCAT 345 consensus_1907#1 CATGAACTCATAGAAGTAAGTGCGT--GTGATTTTCACTTTTTAATAAAAAAATATTCTG 358 **************** * * * ** ** ** *** ** * * consensus_1907#0 TACCGTACTTCCTACAGGTCATGTATAAATAGGCACAGT-TGCCATTCCGATTTGGAGGC 404 consensus_1907#1 TTC---ACTTATTNNGAAACGCGGTTAAATGTCGATCGTATGTAATAGAGAAATT-ATGT 414 * * **** * * * ***** * ** ** ** ** * * * consensus_1907#0 AGATGACGAGGAATTCGATTCCTTGAATCAGTCTGACAGTGTCAATCAATCAGACCATGG 464 consensus_1907#1 ATGTATGTGTAACTACGCATGTTTCAGGAA--CGGACAGC-------------------- 452 * * * * ** * ** * * * ***** consensus_1907#0 AAATCATGAACCACAATCCTCTGTGAATGCTACGAATCAACCAAGACTGTCTACTCCAAC 524 consensus_1907#1 ------------------------------------------------------------ consensus_1907#0 AGGAGACAATCCACACGAATTGAT 548 consensus_1907#1 ------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |