These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 773 fasta sequence [GTTTAACACAAATGTCGTTGTGGGCTCTTCCCGCGAATTTTGTGCAACTCTTCTACTTCCTGGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGATGAAAGCTAATGCNNGCATATATCTGCTCATATATAAGTTATCATANACGAGGCAGGATCCTTCGCCGTCACAAGTTTTGTTCCATAAAATGCATGTTTCATCTATAAGAGCACCGAACACCATAGGTGCTGGTATTGTGCCTAGAATTCTAACTTTGATCCATTGTATACCTAAGGCAAACGATCTTTGATCGTCTCGAACGACACGAAGTGTCGCAGAAAGTGCAGGCATTGTGCAAAGAAAGGTTATAAACATGTTGCAAAATGCTAGAGCGATAAAAGGCCATAGATAAGAGCATGATGTGCTGCAAGTAGTGTTTATTGCCTCGTAACTAATCACACTATCTGCAGTAGTTAGATTCATTGGTGGTGCTCTTATACACGTGCAGTCTGTATATATTTCGACGTTATTTAGTCGCATTTCTTGATAACATCCTGCATGACAAGGGGAATAGTACGTGATTCCATCAACTCCGCATATTGGACTGAACTCTGATCTCGAGCAGCCGCAGCCATTATTGCACGTGTTATCCAATGAAAATGTTTTTTTGGTCTGGTTCGAATAAGGTATAGTGACTCCTGCGAAGTTTAAATTCGGACAATTCAGAACGAAGCACAAAGGTGAAAGCGATGCAGGACGCGGTTGCCAGTATA] [-] EMBL BI509332 [GTTTAACACAAATGTCGTTGTGGGCTCTTCCCGCGAATTTTGTGCAACTCTTCTACTTCCTGGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGATGAAAGCTAATGCTAGCATATATCTGCTCATATATAAGTTATCATAAACGAGGCAGGATCCTTCGCCGTCACAAGTTTTGTTCCATAAAATGCATGTTTCATCTATAAGAGCACCGAACACCATAGGTGCTGGTATTGTGCCTAGAATTCTAACTTTGATCCATTGTATACCTAAGGCAAACGATCTTTGATCGTCTCGAACGACACGAAGTGTCGCAGAAAGTGCAGGCATTGTGCAAAGAAAGGTTATAAACATGTTGCAAAATGCTAGAGCGATAAAAGGCCATAGATAAGAGCATGATGTGCTGCAAGTAGTGTTTATTGCCTCGTAACTAATCACACTATCTGCAGTAGTTAGATTCATTGGTGGTGCTCTTATACACGTGCAGTCTGTATATATTTCGACGTTATTTAGTCGCATTTCTTGATAACATCCTGCATGACAAGGGGAATAGTACGTGATTCCATCAACTCCGCATATTGGACTGAACTCTGATCTCGAGCAGCC ] [-] EMBL BI504586 [ TCTACTTCCTGGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGATGAAAGCTAATGCNNGCATATATCTGCTCATATATAAGTTATCATANACGAGGCAGGATCCTTCGCCGTCACAAGTTTTGTTCCATAAAATGCATGTTTCATCTATAAGAGCACCGAACACCATAGGTGCTGGTATTGTGCCTAGAATTCTAACTTTGATCCATTGTATACCTAAGGCAAACGATCTTTGATCGTCTCGAACGACACGAAGTGTCGCAGAAAGTGCAGGCATTGTGCAAAGAAAGGTTATAAACATGTTGCAAAATGCTAGAGCGATAAAAGGCCATAGATAAGAGCATGATGTGCTGCAAGTAGTGTTTATTGCCTCGTAACTAATCACACTATCTGCAGTAGTTAGATTCATTGGTGGTGCTCTTATACACGTGCAGTCTGTATATATTTCGACGTTATTTAGTCGCATTTCTTGATAACATCCTGCATGACAAGGGGAATAGTACGTGATTCCATCAACTCCGCATATTGGACTGAACTCTGATCTCGAGCAGCC ] [+] EMBL BE844542 [ CTCGAACGACACGAAGTGTCGCAGAAAGTGCAGGCATTGTGCAAAGAAAGGTTATAAACATGTTGCAAAATGCTAGAGCGATAAAAGGCCATAGATAAGAGCATGATGTGCTGCAAGTAGTGTTTATTGCCTCGTAACTAATCACACTATCTGCAGTAGTTAGATTCATTGGTGGTGCTCTTATACACGTGCAGTCTGTATATATTTCGACGTTATTTAGTCGCATTCCTTGATAACATCCTGCATGACAAGGGGAATAGTACGTGATTCCATCAACTCCGCATATTGGACTGAACTCTGATCTCGAGCAGCCGCAGCCATTATTGCACGTGTTATCCAATGAAAATGTTTTTTTGGTCTGGTTCGAATAAGGTATAGTGACTCCTGCGAAGTTTAAATTCGGACAATTCAGAACGAAGCACAAAGGTGAAAGCGATGCAGGACGCGGTTGCCAGTATA] consensusID : consensus_194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 697 fasta sequence [TTAACACAAATGTCGTTGTGGGCTCTTCCCGCGAATTTTGTGCAACTCTTCTACTTCCTGGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGATGAAAGCTAATGCTAGCATATATCTGAAACAAGGATGGTCGAATCACCTTTGGAAACCTCTTCTCGATGACCCTTCATCAAGGCCAGCTGCTTGAAATTGGTGCTCACATCCCAAACTCTGGCCGTGGTGTCGCTGCTCGCAGTGGCCAACTTTTTCCCATTGTTGTCGAAGGTCAGGTCCAGGACCTCGTCATCGTGTCCTCGAAATGTGACCAGGCACGAGTTCATTTTCGTGTCCCACACTTTGGCCGTTTTATCCATCGATGACGAAGCGATCAACGAGCAATCGAAGTTGTAAATGCAGTTTGATAATTCGGATCGATGGCCGATCAACACGCATACGCGACTGGGAAAAAAGATTTTTTTAATTATTATTTTTAATTTTCAAGATTGAAAAAAGGTATGTATATTTGGAATGATTGGAAATAAACTCACGTGAGAATCCTTGTATCCCAAATACTGACAGTGCCGTCGAATGAACCAGTTATTATTTGATTTCCATCGTTATTGAAGTGTAAAGCGATTATTTCTGCAGTGTGACCTCTCAATATCCCTAATTCCTCACCTGTTAAACGAATTC] [+] EMBL BI510140 [TTAACACAAATGTCGTTGTGGGCTCTTCCCGCGAATTTTGTGCAACTCTTCTACTTCCTTGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGATGAAAGCTAATGCTAGCATATATCTGAAACAAGGATGGTCGAATCACCTTTGGAAACCTCTTCTCGATGACCCTTCATCAAGGCCAGCTGCTTGAAATTGGTGCTCACATCCCAAACTCTGGCCGTGGTGTCGCTGCTCGCAGTGGCCAACTTTTTCCCATTGTTGTCGAAGGTCAGGTCCAGGACCTCGTCATCGTGTCCTCGAAATGTGACCAGGCACGAGTTCATTTTCGTGTCCCACACTTTGGCCGTTTTATCCATCGATGACGAAGCGATCAACGAGCAATCGAAGTTGTAAATGCAGTTTGATAATTCGGATCGATGGCCGATCAACACGCATACGCGACTGGGAAAAAAGATTTTTTTAATTATTATTTTTAATTTTCAAGATTGAAAAAAGGTATGTATATTTGGAATGATTGGAAATTAAaaaaaaa ] [+] EMBL BI508481 [ CGTTGTGGGCTCTTCCCGCGAATTTTGTGCAACTCTTCTACTTCCTGGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGATGAAAGCTAATGCTAGCATATATCTGAAACAAGCATGGTCGAATCACCTTTGGAAACCTCTTCTCGATGACCCTTCATCAAGGCCAGCTGCTTGAAATTGGTGCTCACATCCCAAACTCTGGCCGTGGTGTCGCTGCTCGCAGTGGCCAACTTTTTCCCATTGTTGTCGAAGGTCAGGTCCAGGACCTCGTCATCGTGTCCTCGAAATGTGACCAGGCACGAGTTCATTTTCGTGTCCCACACTTTGGCCGTTTTATCCATCGATGACGAAGCGATCAACGAGCAATCGAAGTTGTAAATGCAGTTTGATAATTCGGATCGATGGCCGATCAACACGCATACGCGACTGGGAAAAAAGATTTTTTTAATTATTATTTTTAATTTTCAAGATTGAAAAAAGGTATGTATATTTGGAATGATTGGAAATAAACTCACGTGAGAATCCTTGTATCCCAAATACTGA ] [+] EMBL BI506419 [ GTGTCGCTGCTCGCAGTGGCCAACTTTTTCCCATTGTTGTCGAAGGTCAGGTCCAGGACCTCGTCATCGTGTCCTCGAAATGTGACCAGGCACGAGTTCATTTTCGTGTCCCACACTTTGGCCGTTTTATCCATCGATGACGAAGCGATCAACGAGCAATCGAAGTTGTAAATGCAGTTTGATAATTCGGATCGATGGCCGATCAACACGCATACGCGACTGGGAAAAAAGATTTTTTTAATTATTATTTTTAATTTTCAAGATTGAAAAAAGGTATGTATATTTGGAATGATTGGAAATAAACTCACGTGAGAATCCTTGTATCCCAAATACTGACAGTGCCGTCGAATGAACCAGTTATTATTTGATTTCCATCGTTATTGAAGTGTAAAGCGATTATTTCTGCAGTGTGACCTCTCAATATCCCTAATTCCTCACCTGTTAAACGAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_194#0 GTTTAACACAAATGTCGTTGTGGGCTCTTCCCGCGAATTTTGTGCAACTCTTCTACTTCC 60 consensus_194#1 --TTAACACAAATGTCGTTGTGGGCTCTTCCCGCGAATTTTGTGCAACTCTTCTACTTCC 58 ********************************************************** consensus_194#0 TGGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGAT 120 consensus_194#1 TGGAGGAATATAAGTCCACCAAGCCAGGAAAAAGAAAAGAAGGGATGCTGCTTTGCCGAT 118 ************************************************************ consensus_194#0 GAAAGCTAATGCNNGCATATATCTGCTCATATATAAGTTATCATANACGAGGCAGGATCC 180 consensus_194#1 GAAAGCTAATGCTAGCATATATCTG---AAACAAGGATGGTCG-AATCACCTTTGGAAAC 174 ************ *********** * * * * ** * * *** * consensus_194#0 TTCGCCGTCACAAGTTTTGTTCCATAAAATGCATGTTTCATCTATAAGAGCACCGAACAC 240 consensus_194#1 CTCTTCTCGATGACCCTTCATCAAGGCCAGCTGCTTGAAATTGGTGCTCACATCCCAAAC 234 ** * * * ** ** * * * ** * ** * * ** consensus_194#0 CATAGGTGCTGGTATTGTGCCTAGAATT--CTAACTTTGATCCATTGTATACCTAAGGCA 298 consensus_194#1 TCTGGCCG-TGGTGTCGCTGCTCGCAGTGGCCAACTTTTTCCCATTGT-TGTCGAAGGTC 292 * * * **** * * ** * * * * ****** ******* * * **** consensus_194#0 AACGATCTTTGATCGTCTCGAACGACACGAAGTGTCGCAGAAAGTGCAGGCATTGTGCAA 358 consensus_194#1 A--GGTCCAGGACCTCGTCA------TCGTGTCCTCGAAATGTGACCAGGCAC------- 337 * * ** ** * ** ** *** * * ****** consensus_194#0 AGAAAGGTTATAAACATGTTGCAAAATGCTAGAGCGATAAAAGGCCATAGATAAGAGCAT 418 consensus_194#1 ---GAGTTCATTTTCGTGTCCCACACT--TTGGCCGTTTTAT--CCATCGATGACGAAGC 390 ** * ** * *** ** * * * * ** * * **** *** * consensus_194#0 GATGTGCTGCAAGTAGTGTTTATTGCCTCGTAACTAATCACACTATCTGCAGTAGTTAGA 478 consensus_194#1 GAT---CAACGAGCAAT-----------CGAAGTTGTAAATGCAGTTTG--ATAATTCGG 434 *** * * ** * * ** * * * * * ** ** ** * consensus_194#0 TTCATTGGTGGTGCTCTTATACACGTGCAGTCTGTATATATTTCGACGTTATTTAGTCGC 538 consensus_194#1 ATCGATGGCCG-ATCAACACGCATACGCGACTGGGAAAAA----AGATTTTTTTAATTAT 489 ** *** * * ** ** * * * * ** **** * consensus_194#0 ATTTCTTGATAACATCCTGCATGACAAGGGGAATA-GTACGTGATTCCATCAACTCCGCA 597 consensus_194#1 TATTTTTAAT--TTTCAAGATTGAAAAAAGGTATGTATATTTGGAATGATTGGAAATAAA 547 ** ** ** ** * *** ** ** ** ** ** ** * consensus_194#0 TATTGGACTGAACTCTGATCTCGAGCAGCCGCAGCCATTATTGCACGTGTTATCCAATGA 657 consensus_194#1 CTCACGTGAGAATCCTTGTATCC--CAAATACTGACAGTGCCGT-CGAATGAACCAGTTA 604 * *** ** * ** ** * * ** * * ** * * *** * * consensus_194#0 AAATGTTTTTTTGGTC-TGGTTCGAATAAGGTATAGTGACTCCTGCGAAGTTTAAATTCG 716 consensus_194#1 TTATTTGATTTCCATCGTTATTGAAGTGTAAAGCGATTATTTCTGC--AGTGTGACCTCT 662 ** * *** ** * ** * * * * * **** *** * * ** consensus_194#0 GACAATTCAGAACGAAGCACAAAGGTGAAAGCGATGCAGGACGCGGTTGCCAGTATA 773 consensus_194#1 CAATATCCCTAATTCCTCACC--TGTTAAACGAATTC-------------------- 697 * ** * ** *** ** *** ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |