These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [AAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTGTGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGATGAAACAAAAGATCGTATCATTTTCAATTTGAATGATTTCTAATAATAAAAAAAAAAAATTATATAAAATTTCTCGTTAAAAGAGATTTTTTTTTTCTTTCCAATTCACACAGATTATTTTCTTCTAATTTTACATATGCGTTGATATGTTCCCTTACAAATTGGCGAGTTTCAACAATTTTTTG] [+] EMBL BI510162 [AAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTGTGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGATGAAACAAAAGATCGTATCATTTTCAATTTGAATGATTTCTAATAATAAAAAAAAAAAATTATATAAAATTTCTCGTTAAAAGAGATTTTTTTTTTCTTTCCAATTCACACAGATTATTTTCTTCTAATTTTACATATGCGTTGATATGTTCCCTTACAAATTGGCGAGTTTCAACAATTTTTTG] consensusID : consensus_1949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [TTGTTTTTATTTTTTTTTTTTTATCTTTTATTTTTTGAAGCAGTTAATCAAGTCGATTAATTTTTTTAAAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTNNGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGAAGAAACAAAGTAGAAAAGGGAAGAATAAAGAGAACGATTAGAAAAAAAA] [+] EMBL BI510042 [TTGTTTTTATTTTTTTTTTTTTATCTTTTATTTTTTGAAGCAGTTAATCAAGTCGATTAATTTTTTTAAAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTNNGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGAAGAAACAAAGTAGAAAAGGGAAGAATAAAGAGAACGATTAGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1949#0 ------------------------------------------------------------ consensus_1949#1 TTGTTTTTATTTTTTTTTTTTTATCTTTTATTTTTTGAAGCAGTTAATCAAGTCGATTAA 60 consensus_1949#0 --------AAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCA 52 consensus_1949#1 TTTTTTTAAAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCA 120 **************************************************** consensus_1949#0 ATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATT 112 consensus_1949#1 ATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATT 180 ************************************************************ consensus_1949#0 GAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTA 172 consensus_1949#1 GAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTA 240 ************************************************************ consensus_1949#0 TTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTGTGTTACTTTTTTTT 232 consensus_1949#1 TTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTNNGTTACTTTTTTTT 300 ********************************************* ************* consensus_1949#0 GATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAA 292 consensus_1949#1 GATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAA 360 ************************************************************ consensus_1949#0 ATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATA 352 consensus_1949#1 ATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATA 420 ************************************************************ consensus_1949#0 TAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGATGAAACAAAAGATCGTATCATTTTCA 412 consensus_1949#1 TAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGAAGAAACAAA-----GTAGAAAAGGGA 475 ********************************** ******** *** * * consensus_1949#0 ATTTGAATGATTTCTAATAATAAAAAAAAAAAATTATATAAAATTTCTCGTTAAAAGAGA 472 consensus_1949#1 AGAATAAAGAG----AACGATTAGAAAAAAAA---------------------------- 503 * ** ** ** ** * ******** consensus_1949#0 TTTTTTTTTTCTTTCCAATTCACACAGATTATTTTCTTCTAATTTTACATATGCGTTGAT 532 consensus_1949#1 ------------------------------------------------------------ consensus_1949#0 ATGTTCCCTTACAAATTGGCGAGTTTCAACAATTTTTTG 571 consensus_1949#1 --------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |