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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1954 cluster # 1954       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1954#0 length = 440 sequences # 1  
consensus_1954#1 length = 363 sequences # 1  

consensusID : consensus_1954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [CTCAAGGTGGTCGTGGAAATCGTGGAGGATGGATGAATCGTGGAAATATGCGTGGCAGAGGAAGAGGTCGTGGTGGTTTTAGAAATCAACCCGGTAACGCTGGTGCCAAACCCAAGAATACGCTGAAATTCGATAATGATTATGATTTTGAACAAGCTAATACTGAGTTCGAAGAATTAAGATCTCAATTAGCAAAAACAAAAATTGATTCTGGTGCTGATAATGAAAAGAAGGATGATAGTGGTAATGAAACTGGAGCAGGTGAAGGTGAACCAGAAGAAGAACCAGAGATAGTTCATTATGACAAATCAAAATCGTTCTTTGATAACATCAGTTGCGAAGCAGTGGAGAGAAGTAAAGGACGATTNNAACGTACAGACTGGAGGACAGAGCGCAAATTGAACTCTGAAACATTTGGTGTAGCGTCAACGAGACGCGGT]

[+] EMBL BI504838             [CTCAAGGTGGTCGTGGAAATCGTGGAGGATGGATGAATCGTGGAAATATGCGTGGCAGAGGAAGAGGTCGTGGTGGTTTTAGAAATCAACCCGGTAACGCTGGTGCCAAACCCAAGAATACGCTGAAATTCGATAATGATTATGATTTTGAACAAGCTAATACTGAGTTCGAAGAATTAAGATCTCAATTAGCAAAAACAAAAATTGATTCTGGTGCTGATAATGAAAAGAAGGATGATAGTGGTAATGAAACTGGAGCAGGTGAAGGTGAACCAGAAGAAGAACCAGAGATAGTTCATTATGACAAATCAAAATCGTTCTTTGATAACATCAGTTGCGAAGCAGTGGAGAGAAGTAAAGGACGATTNNAACGTACAGACTGGAGGACAGAGCGCAAATTGAACTCTGAAACATTTGGTGTAGCGTCAACGAGACGCGGT]


>consensus_1954#0 CTCAAGGTGGTCGTGGAAATCGTGGAGGATGGATGAATCGTGGAAATATGCGTGGCAGAG GAAGAGGTCGTGGTGGTTTTAGAAATCAACCCGGTAACGCTGGTGCCAAACCCAAGAATA CGCTGAAATTCGATAATGATTATGATTTTGAACAAGCTAATACTGAGTTCGAAGAATTAA GATCTCAATTAGCAAAAACAAAAATTGATTCTGGTGCTGATAATGAAAAGAAGGATGATA GTGGTAATGAAACTGGAGCAGGTGAAGGTGAACCAGAAGAAGAACCAGAGATAGTTCATT ATGACAAATCAAAATCGTTCTTTGATAACATCAGTTGCGAAGCAGTGGAGAGAAGTAAAG GACGATTNNAACGTACAGACTGGAGGACAGAGCGCAAATTGAACTCTGAAACATTTGGTG TAGCGTCAACGAGACGCGGT



consensusID : consensus_1954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence
                              [CCAATCTCTGGAAGATGGTGTATTAGATCTCATTAGTGGAGGTTCACGATCAACAACTCCAACTTCATCTTTATTGACACGAAAAAGTCCAACTATGGATCAAAGTATTCAGGTAGGCCATCAACAACAACAACAACAACAGCAGAGTGGAAATGTTGGCAAGCTTGGTGAAAAGACGAATATAAGAACTATTCAACCTGCTCGACGTGATCACGATAGCCATAGTGGTAATAAAACAGGAGGTACTGTATCACAATATAATGTTGGAAAACGTGATACAATGAAACAAGATGGTCAACTTCAAGGTCAAGGTACTCATGCTCAAGGTGGTCGTGGAAATCGTGGAGGATGGATGAATCGTGG]

[+] EMBL BI504524             [CCAATCTCTGGAAGATGGTGTATTAGATCTCATTAGTGGAGGTTCACGATCAACAACTCCAACTTCATCTTTATTGACACGAAAAAGTCCAACTATGGATCAAAGTATTCAGGTAGGCCATCAACAACAACAACAACAACAGCAGAGTGGAAATGTTGGCAAGCTTGGTGAAAAGACGAATATAAGAACTATTCAACCTGCTCGACGTGATCACGATAGCCATAGTGGTAATAAAACAGGAGGTACTGTATCACAATATAATGTTGGAAAACGTGATACAATGAAACAAGATGGTCAACTTCAAGGTCAAGGTACTCATGCTCAAGGTGGTCGTGGAAATCGTGGAGGATGGATGAATCGTGG]


>consensus_1954#1 CCAATCTCTGGAAGATGGTGTATTAGATCTCATTAGTGGAGGTTCACGATCAACAACTCC AACTTCATCTTTATTGACACGAAAAAGTCCAACTATGGATCAAAGTATTCAGGTAGGCCA TCAACAACAACAACAACAACAGCAGAGTGGAAATGTTGGCAAGCTTGGTGAAAAGACGAA TATAAGAACTATTCAACCTGCTCGACGTGATCACGATAGCCATAGTGGTAATAAAACAGG AGGTACTGTATCACAATATAATGTTGGAAAACGTGATACAATGAAACAAGATGGTCAACT TCAAGGTCAAGGTACTCATGCTCAAGGTGGTCGTGGAAATCGTGGAGGATGGATGAATCG TGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1954#0      CTCAAGGTGGTCGTGGAAATCGTGGAGGATGGATGAATCGTGGAAATATGCGTGGCAGAG 60
consensus_1954#1      ---------------------------------CCAATCTCTGGAAGATG-GTGTATTAG 26
                                                         ****   * ** *** ***    **

consensus_1954#0      GAAGAGGTCGTGGTGGTTTTAGAAATCAACCCGGTAACGCTGGTGCCAAACCCAAGAATA 120
consensus_1954#1      ATCTCATTAGTGGAGGTTCACGA--TCAAC-----AACTCCAACTTCATCTTTATTGACA 79
                             * **** ****   **  *****     *** *      **     *   * *

consensus_1954#0      CGCTGAAATTCGATAATGATTATGATTTTGAACAAGCTAATACTGAGTTCGAAGAATTAA 180
consensus_1954#1      CGAAAAAGTCCAACTATG-----------GATCAA---AGTATTCAGGTAGGCCA-TCAA 124
                      **   ** * * *  ***           ** ***   * ** * ** * *   * * **

consensus_1954#0      GATCTCAATTAGCAAAAACAAAA-ATTGATTCTGGTGCTGATAATGAAAAGAAGGATGAT 239
consensus_1954#1      CAACAACAACAACAACAGCAGAGTGGAAATGTTGGCAAGCTTGGTGAAAAGACGAATATA 184
                       * *   *  * *** * ** *      **  ***      *  ******** * **   

consensus_1954#0      AGTGGTAATGAAACTGGAGCAGGTGAAGGTGA--ACCAGAAGAAGAACCAGAGATAGTTC 297
consensus_1954#1      AGAACTATTCAACCTGCTCGACGTGATCACGATAGCCATAGTGGTAATAAAACAGGAGGT 244
                      **   ** * ** ***    * ****    **   *** *     **  * * *      

consensus_1954#0      ATTATGACAAATCAAAATCGTTCTTTGATAACATCAGTTGCGAAGCAGTGGAGAGAAGTA 357
consensus_1954#1      ACTGTATCACAATATAATG----TTGGAAAACGT-------GATACAATGAAACAAGAT- 292
                      * * *  ** *  * ***     ** ** *** *       **  ** ** *   *  * 

consensus_1954#0      AAGGACGATTNNAACGTACAGACTGGAGGACAGAGCGCAAATTGAACTCTGAAACATTTG 417
consensus_1954#1      --GGTCAACTTCAAGGTCAAGGT-----ACTCATGCTCAAGGTGGTCGTGGAAA----TC 341
                        ** * * *  ** **  **             ** ***  **  *   ****    * 

consensus_1954#0      GTGTAGCGTCAACGAGACGCGGT 440
consensus_1954#1      GTGGAGGATGGATGAATCGTGG- 363
                      *** **  *  * **  ** ** 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)