These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 860 fasta sequence [GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGGTAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGAAAATGTCGTGGGCCAGGATAGCC] [+] EMBL BI505291 [GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGGTAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCNNNCTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAA ] [+] EMBL BI505609 [ GCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAAAG ] [+] EMBL BI505074 [ TTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGAGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGAAAATGTCGTGGGCCAGGATAGCC] [+] EMBL BI516851 [ TTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCC ] consensusID : consensus_197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [GAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA] [+] EMBL BI509300 [GAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA] consensusID : consensus_197#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TTTATCGGGTCGCCAGGATGCAGCGCGAACGCAATCACTGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAATTTCCTATTGCCTCCAGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCC] [+] EMBL BI505559 [TTTATCGGGTCGCCAGGATGCAGCGCGAACGCAATCACTGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAATTTCCTATTGCCTCCAGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_197#0 GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGAT 60 consensus_197#1 --------------------------------------------GAGGGACAGTTTCGAT 16 consensus_197#2 ------------------------------------------------------------ consensus_197#0 CAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTT 120 consensus_197#1 CAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTT 76 consensus_197#2 ---------------------TTTATCGGGTC-GCCAGGATGCAGCGCGAACGCAATCAC 38 ** * ** * ** * * * ** consensus_197#0 TGTGTAGTTGAATTTGAAA--TGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTG 178 consensus_197#1 TGTGTAGTTGAATTTGAAA--TGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTG 134 consensus_197#2 TGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAAT--TTCCTATTGCCTC 96 ** * *** ** ** * ** *** * ** ** ** ***** * consensus_197#0 CCAGTGACGCCTAGTGTGAGAAAGTTTG-CAGTGATTCGCACACAACGTACCGTACAGTA 237 consensus_197#1 CCAGTGACGCCTAGTGTGAGAAAGTTTG-CAGTGATTCGCACACAACGTACCGTACAGTA 193 consensus_197#2 CAGGCGA-GCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTA-ATCCCGTGC---- 150 * * ** ** * * * * * * * *** * * **** * consensus_197#0 ACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGG 297 consensus_197#1 ACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATG- 252 consensus_197#2 ----CCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAAT-GATGATCGTGCG- 204 * ** ** * * * * ** * ** ** **** * consensus_197#0 TAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCA 357 consensus_197#1 ------------------------------------------------------------ consensus_197#2 ------------------------------------------------------------ consensus_197#0 CTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGAT 417 consensus_197#1 ------------------------------------------------------------ consensus_197#2 ------------------------------------------------------------ consensus_197#0 CGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 477 consensus_197#1 -------------TGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 299 consensus_197#2 ------CCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 258 *********************************************** consensus_197#0 GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 537 consensus_197#1 GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 359 consensus_197#2 GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 318 ************************************************************ consensus_197#0 GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 597 consensus_197#1 GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 419 consensus_197#2 GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 378 ************************************************************ consensus_197#0 GAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCG 657 consensus_197#1 GAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA---------- 469 consensus_197#2 GAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCG 438 *********************** ************************ consensus_197#0 TGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAAC 717 consensus_197#1 ------------------------------------------------------------ consensus_197#2 TGTTCTTCTCGTGGTTGGTGTGCGTGCCC------------------------------- 467 consensus_197#0 GAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGG 777 consensus_197#1 ------------------------------------------------------------ consensus_197#2 ------------------------------------------------------------ consensus_197#0 TGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGA 837 consensus_197#1 ------------------------------------------------------------ consensus_197#2 ------------------------------------------------------------ consensus_197#0 AAATGTCGTGGGCCAGGATAGCC 860 consensus_197#1 ----------------------- consensus_197#2 ----------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |