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Apis mellifera
cluster # 1973 cluster # 1973       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1973#0 length = 483 sequences # 1  
consensus_1973#1 length = 475 sequences # 1  

consensusID : consensus_1973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence
                              [AACAGCAGCGGTGACCTTGCCGGCGACATTCCGCCCGCCAGATATTCCAACGAAGGCACCTCGAGCAGGCTCAATTACACCCCCTCGTCCGACCAGGATTACGGGACGCTGGCCTGTTGGGCGAGTAACGCGGTTGGCCCCTCCAAACAGCCCTGCCTCTACCAAGTGATCGCAGCAGGCAGGCCGTACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGGATATCGTGCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGACAAGCAACGGTTAGAATCGTCGAACCCNNNTGGGAGTTGGAGCTTCGGAAACCGGCAACTGTCGCCCTCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTANNNTGGAAGGGGAAGCGTTAAAAGGAGTGGCCAAGTTCACCGGGGAATCGGGATCCTCGGTGGACATGTCACCGATCC]

[+] EMBL BI510036             [AACAGCAGCGGTGACCTTGCCGGCGACATTCCGCCCGCCAGATATTCCAACGAAGGCACCTCGAGCAGGCTCAATTACACCCCCTCGTCCGACCAGGATTACGGGACGCTGGCCTGTTGGGCGAGTAACGCGGTTGGCCCCTCCAAACAGCCCTGCCTCTACCAAGTGATCGCAGCAGGCAGGCCGTACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGGATATCGTGCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGACAAGCAACGGTTAGAATCGTCGAACCCNNNTGGGAGTTGGAGCTTCGGAAACCGGCAACTGTCGCCCTCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTANNNTGGAAGGGGAAGCGTTAAAAGGAGTGGCCAAGTTCACCGGGGAATCGGGATCCTCGGTGGACATGTCACCGATCC]


>consensus_1973#0 AACAGCAGCGGTGACCTTGCCGGCGACATTCCGCCCGCCAGATATTCCAACGAAGGCACC TCGAGCAGGCTCAATTACACCCCCTCGTCCGACCAGGATTACGGGACGCTGGCCTGTTGG GCGAGTAACGCGGTTGGCCCCTCCAAACAGCCCTGCCTCTACCAAGTGATCGCAGCAGGC AGGCCGTACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGG ATATCGTGCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGAC AAGCAACGGTTAGAATCGTCGAACCCNNNTGGGAGTTGGAGCTTCGGAAACCGGCAACTG TCGCCCTCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTANNNTGGAAGGGGAAG CGTTAAAAGGAGTGGCCAAGTTCACCGGGGAATCGGGATCCTCGGTGGACATGTCACCGA TCC



consensusID : consensus_1973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [ACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGGATATCGTGCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGACAAGCAACGGTTAGAATCGTCGAACCCGTACTGGGAGTTGGAGCTTCGGAAACCGGCAACTGTCGCCCTCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTATCATGGAAGGGGAAGCGTTAAAAGGAGTGGACATGTCACCGATCCTGATCGGGCTGGGCGGAACCGCGACTGGATTAGGCTTGATCGTGACAGGTGTATTGATGGCGCTTTGGAGGAAACACGCGGCAACCCCGGCGAAAGCGAAATCGCCCCCCCAACAGCCGAGCATCGCGACATTCGCCGGGAAGGGCGAGGAGGAAGACGGGAATCCTGATCTAATACCCACCACAGCCTTGACCAATCACCTCACAGATAG]

[+] EMBL BI511478             [ACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGGATATCGTGCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGACAAGCAACGGTTAGAATCGTCGAACCCGTACTGGGAGTTGGAGCTTCGGAAACCGGCAACTGTCGCCCTCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTATCATGGAAGGGGAAGCGTTAAAAGGAGTGGACATGTCACCGATCCTGATCGGGCTGGGCGGAACCGCGACTGGATTAGGCTTGATCGTGACAGGTGTATTGATGGCGCTTTGGAGGAAACACGCGGCAACCCCGGCGAAAGCGAAATCGCCCCCCCAACAGCCGAGCATCGCGACATTCGCCGGGAAGGGCGAGGAGGAAGACGGGAATCCTGATCTAATACCCACCACAGCCTTGACCAATCACCTCACAGATAG]


>consensus_1973#1 ACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGGATATCGT GCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGACAAGCAAC GGTTAGAATCGTCGAACCCGTACTGGGAGTTGGAGCTTCGGAAACCGGCAACTGTCGCCC TCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTATCATGGAAGGGGAAGCGTTAA AAGGAGTGGACATGTCACCGATCCTGATCGGGCTGGGCGGAACCGCGACTGGATTAGGCT TGATCGTGACAGGTGTATTGATGGCGCTTTGGAGGAAACACGCGGCAACCCCGGCGAAAG CGAAATCGCCCCCCCAACAGCCGAGCATCGCGACATTCGCCGGGAAGGGCGAGGAGGAAG ACGGGAATCCTGATCTAATACCCACCACAGCCTTGACCAATCACCTCACAGATAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1973#0      AACAGCAGCGGTGACCTTGCCGGCGACATTCCGCCCGCCAGATATTCCAACGAAGGCACC 60
consensus_1973#1      ------------------------------------------------------------
                                                                                  

consensus_1973#0      TCGAGCAGGCTCAATTACACCCCCTCGTCCGACCAGGATTACGGGACGCTGGCCTGTTGG 120
consensus_1973#1      ------------------------------------------------------------
                                                                                  

consensus_1973#0      GCGAGTAACGCGGTTGGCCCCTCCAAACAGCCCTGCCTCTACCAAGTGATCGCAGCAGGC 180
consensus_1973#1      ------------------------------------------------------------
                                                                                  

consensus_1973#0      AGGCCGTACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGG 240
consensus_1973#1      -------ACCCGTTGCAGAATTGCACGGCCGGCTACAATCAGACCGGCTCCTGGATCCGG 53
                             *****************************************************

consensus_1973#0      ATATCGTGCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGAC 300
consensus_1973#1      ATATCGTGCGTGGAGGGATACGACGGTGGACTGCCGCAAAAATTCGTCGCGATCGTGGAC 113
                      ************************************************************

consensus_1973#0      AAGCAACGGTTAGAATCGTCGAACCCNNN-TGGGAGTTGGAGCTTCGGAAACCGGCAACT 359
consensus_1973#1      AAGCAACGGTTAGAATCGTCGAACCCGTACTGGGAGTTGGAGCTTCGGAAACCGGCAACT 173
                      **************************    ******************************

consensus_1973#0      GTCGCCCTCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTANNNTGGAAGGGGAA 419
consensus_1973#1      GTCGCCCTCTACGCGGTAAACGTGAAGGGATCCAGCGATCCGGTTATCATGGAAGGGGAA 233
                      **********************************************   ***********

consensus_1973#0      GCGTTAAAAGGAGTGGCCAAGTTCACCGGGG--AATCGGGATCCTCGGTGGACATGTCAC 477
consensus_1973#1      GCGTTAAAAGGAGTGGACATGT-CACCGATCCTGATCGGG---CTGGGCGGAACCGCGAC 289
                      **************** ** ** *****      ******   ** ** ***   *  **

consensus_1973#0      CGATCC------------------------------------------------------ 483
consensus_1973#1      TGGATTAGGCTTGATCGTGACAGGTGTATTGATGGCGCTTTGGAGGAAACACGCGGCAAC 349
                       *                                                          

consensus_1973#0      ------------------------------------------------------------
consensus_1973#1      CCCGGCGAAAGCGAAATCGCCCCCCCAACAGCCGAGCATCGCGACATTCGCCGGGAAGGG 409
                                                                                  

consensus_1973#0      ------------------------------------------------------------
consensus_1973#1      CGAGGAGGAAGACGGGAATCCTGATCTAATACCCACCACAGCCTTGACCAATCACCTCAC 469
                                                                                  

consensus_1973#0      ------
consensus_1973#1      AGATAG 475
                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)