These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TCTTAAGGAGGCAGTAAATGCATTGGAGCGTGGTGATAAGAAGGTAGAAAAGGTATGTTGTGAGGCTATATTTCGGTTTCTATGACGCAATACGTTCATTTTTAGGCTCAAGAGGATGTCAGTAAAAATTTAGTACATATAAAAAATATGCTTTATGGAACAGCTGAAACAGAACCTCAAGCAGATATTGTTGTTGCCCAATTGGCGCAGGAATTGTATAATAGTAATTTGTTGCTTTTACTTGTGCAAAATCTTAGTCGCATAGATTTCGAGGGTAAAAAGGATGTTGCTCAAGTATTTAATAACATATTACGGAGACAAATTGGAACCAGATCTCCAACAGTAGAATATATATGTACTAAACCAGAAATATTATTTACTCTTATGTCTGGGTATGAACACCAAGACATTGCTTTAAACTGTGGCACTATGTTAAGAGAGTGTGCAAGATATGAGGCCTTGGCTAAAATCATGATCTATTCGGACGATTTTTANNATTTTTTCAGATATGTTGAAGTATCAACTTTTGACATAGCTTCCGACGCGTTTTCTACATTCAAAGTAAGCGATGATAAAGCGCATAATATATCG] [+] EMBL BI514907 [TCTTAAGGAGGCAGTAAATGCATTGGAGCGTGGTGATAAGAAGGTAGAAAAGGTATGTTGTGAGGCTATATTTCGGTTTCTATGACGCAATACGTTCATTTTTAGGCTCAAGAGGATGTCAGTAAAAATTTAGTACATATAAAAAATATGCTTTATGGAACAGCTGAAACAGAACCTCAAGCAGATATTGTTGTTGCCCAATTGGCGCAGGAATTGTATAATAGTAATTTGTTGCTTTTACTTGTGCAAAATCTTAGTCGCATAGATTTCGAGGGTAAAAAGGATGTTGCTCAAGTATTTAATAACATATTACGGAGACAAATTGGAACCAGATCTCCAACAGTAGAATATATATGTACTAAACCAGAAATATTATTTACTCTTATGTCTGGGTATGAACACCAAGACATTGCTTTAAACTGTGGCACTATGTTAAGAGAGTGTGCAAGATATGAGGCCTTGGCTAAAATCATGATCTATTCGGACGATTTTTANNATTTTTTCAGATATGTTGAAGTATCAACTTTTGACATAGCTTCCGACGCGTTTTCTACATTCAAAGTAAGCGATGATAAAGCGCATAATATATCG] consensusID : consensus_2137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CTGAAGAAATATGTTTAACATAATTTATTGTAAACCTTTTAACATATGAAAGAAATATTCGCAAAGTACNNNTGTATAATAAAAATTCTTTATGAATATATATATATATAAAAATTGAACTATTGTAAATTTAGAATATGAATAATAGAATAGAACAATTTTTATGCATAAATTTAAAATTTGAAATATTCATCAATTAAATCACGTCTGTACATTGTGAAAAACATGCCTCTGTTCGGAAAGTCTCAAAAGAGTCCGGCGGAGGTGGTGAAAGCTCTTAAGGAGGCAGTAAATGCATTGGAGCGTGGTGATAAGAAGGTAGAAAAGGCTCAAGAGGATGTCAGTAAAAATTTAGTACATATAAAAAATATGCTTTATGGAACAGCTGAAACAGAACCTCAAGCAGATATTGTTGTTGCCCAATTGGCGCAGGAATTGTATAATAGTAATTTGTTGCTTTTACTTGTGCAAAATCTTAGTCGCATAGATTTCGAGGGTAAAAAGGATGTTGCTCAAGTATTTAATAACATATTACGGAGACAAATTGGAACCAGATCTCCAACAGTAGAATA] [+] EMBL BI504018 [CTGAAGAAATATGTTTAACATAATTTATTGTAAACCTTTTAACATATGAAAGAAATATTCGCAAAGTACNNNTGTATAATAAAAATTCTTTATGAATATATATATATATAAAAATTGAACTATTGTAAATTTAGAATATGAATAATAGAATAGAACAATTTTTATGCATAAATTTAAAATTTGAAATATTCATCAATTAAATCACGTCTGTACATTGTGAAAAACATGCCTCTGTTCGGAAAGTCTCAAAAGAGTCCGGCGGAGGTGGTGAAAGCTCTTAAGGAGGCAGTAAATGCATTGGAGCGTGGTGATAAGAAGGTAGAAAAGGCTCAAGAGGATGTCAGTAAAAATTTAGTACATATAAAAAATATGCTTTATGGAACAGCTGAAACAGAACCTCAAGCAGATATTGTTGTTGCCCAATTGGCGCAGGAATTGTATAATAGTAATTTGTTGCTTTTACTTGTGCAAAATCTTAGTCGCATAGATTTCGAGGGTAAAAAGGATGTTGCTCAAGTATTTAATAACATATTACGGAGACAAATTGGAACCAGATCTCCAACAGTAGAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2137#0 ------------------------------------------------------------ consensus_2137#1 CTGAAGAAATATGTTTAACATAATTTATTGTAAACCTTTTAACATATGAAAGAAATATTC 60 consensus_2137#0 ------------------------------------------------------------ consensus_2137#1 GCAAAGTACNNNTGTATAATAAAAATTCTTTATGAATATATATATATATAAAAATTGAAC 120 consensus_2137#0 ------------------------------------------------------------ consensus_2137#1 TATTGTAAATTTAGAATATGAATAATAGAATAGAACAATTTTTATGCATAAATTTAAAAT 180 consensus_2137#0 --------------------------------TCTTAAGGAGGCAGTAAATGCATT-GGA 27 consensus_2137#1 TTGAAATATTCATCAATTAAATCACGTCTGTACATTGTGAAAAACATGCCTCTGTTCGGA 240 ** * * * * ** *** consensus_2137#0 GCGTGGTGATAA--------GAAGGTAGAAAAGGTATGTTGTGAGGCTATATTTCGGTTT 79 consensus_2137#1 AAGTCTCAAAAGAGTCCGGCGGAGGTGGTGAAAGCTCTTAAGGAGGCAGTAAATGCATTG 300 ** * * * **** * ** * * ***** ** * ** consensus_2137#0 CTATGACGCAATACGTTCATTTTTA-GGCTCAAGAGGATGTCAGTAAAAATTTAGTACAT 138 consensus_2137#1 GAGCGTGGTGATAAGAAGGTAGAAAAGGCTCAAGAGGATGTCAGTAAAAATTTAGTACAT 360 * * *** * * * ********************************** consensus_2137#0 ATAAAAAATATGCTTTATGGAACAGCTGAAACAGAACCTCAAGCAGATATTGTTGTTGCC 198 consensus_2137#1 ATAAAAAATATGCTTTATGGAACAGCTGAAACAGAACCTCAAGCAGATATTGTTGTTGCC 420 ************************************************************ consensus_2137#0 CAATTGGCGCAGGAATTGTATAATAGTAATTTGTTGCTTTTACTTGTGCAAAATCTTAGT 258 consensus_2137#1 CAATTGGCGCAGGAATTGTATAATAGTAATTTGTTGCTTTTACTTGTGCAAAATCTTAGT 480 ************************************************************ consensus_2137#0 CGCATAGATTTCGAGGGTAAAAAGGATGTTGCTCAAGTATTTAATAACATATTACGGAGA 318 consensus_2137#1 CGCATAGATTTCGAGGGTAAAAAGGATGTTGCTCAAGTATTTAATAACATATTACGGAGA 540 ************************************************************ consensus_2137#0 CAAATTGGAACCAGATCTCCAACAGTAGAATATATATGTACTAAACCAGAAATATTATTT 378 consensus_2137#1 CAAATTGGAACCAGATCTCCAACAGTAGAATA---------------------------- 572 ******************************** consensus_2137#0 ACTCTTATGTCTGGGTATGAACACCAAGACATTGCTTTAAACTGTGGCACTATGTTAAGA 438 consensus_2137#1 ------------------------------------------------------------ consensus_2137#0 GAGTGTGCAAGATATGAGGCCTTGGCTAAAATCATGATCTATTCGGACGATTTTTANNAT 498 consensus_2137#1 ------------------------------------------------------------ consensus_2137#0 TTTTTCAGATATGTTGAAGTATCAACTTTTGACATAGCTTCCGACGCGTTTTCTACATTC 558 consensus_2137#1 ------------------------------------------------------------ consensus_2137#0 AAAGTAAGCGATGATAAAGCGCATAATATATCG 591 consensus_2137#1 --------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |