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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCTTGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAACAGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCGGCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGACGATGGAGAGCGACAACGTGGAGACGGAGGGTGTGGTGCTGTACAAATCCATCATGCTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATAGAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTGCCAAATTCGGCCAACGTTTATTACGCCGTCAACACCGCGCACAATCTCAACTTCATTCTACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCACAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATT]
[+] EMBL BI504088 [ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCTTGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAACAGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCGGCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGACGATGGAGAGCGACAACGTGGAGACGGAGGGTGTGGTGCTGTACAAATCCATCATGCTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATAGAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTGCCAAATTCGGCCAACGTTTATTACGCCGTCAACACCGCGCACAATCTCAACTTCATTCTACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCACAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATT]
consensusID : consensus_2196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[TGTCGAAGAGGTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCGGCCTCGATTATTTATTCTTCTCTTCCCGCGGGGGAACGTCTCGAGAAAGGAGGAATCTCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTATCCATGACAGTCCGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCTTTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAACAGCGATCGAATCGGATAACATTGATCGTCGATCAAGCTGTCCTTCCCGTAAA]
[+] EMBL BI503874 [TGTCGAAGAGGTTAGGATTATTATTACGTACGTTTGATAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCGGCCTCGATTATTTATTCTTCTCTTCCCGCGGGGGAACGTCTCGAGAAAGGAGGAATCTCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTATCCATGACAGTCCGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCTTTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAACAGCGATCGAATCGGATAACATTGATCGTCGATCAAGCTGTCCTTCCCGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2196#0 ACTCTCTCGATCGGCGCACATCGCCGTCCCAGATGTCCAGCTCGTCGTCCAGCTCGTCCT 60
consensus_2196#1 ------------------------------------------------------------
consensus_2196#0 TGCCATCGTTGGACGTGTCGTTGAGCTCGGGGGGCGGGAGCGGAGCGGCGACGAGCCAAC 120
consensus_2196#1 ------------------------------------------------------------
consensus_2196#0 AGAACCGATTGGCACCGCCGACCGCCATCACCGCGAACGGGAACAGCCCCAACGTGGTCG 180
consensus_2196#1 ------------------------------------------------------------
consensus_2196#0 GCCTGTCCAGCCCGAGCCACTCGCACAAGAGTTCGCCCGACTTTTACATCATAAAAGTGA 240
consensus_2196#1 ---------------------TGTCGAAGAGGTTA--GGATTATTATTACGTACGTTTGA 37
* ***** * ** * *** * ** ***
consensus_2196#0 CGATGGAGAGCGACAA---CGTGGAGACGGAGGGTGTGGTGCTGTACA-AATCCATCATG 296
consensus_2196#1 TAATCGATATTGATGGATTCGGATAATTTCATCGCGTTGCGTTGGGCGGAAGCGATGTCG 97
** ** * ** ** * * * ** * * ** * ** * ** *
consensus_2196#0 CTCTCGAACAACGAGAGGACGCCGCAAGTGATACGGAACGCTATGCTCAAGTTGGGAATA 356
consensus_2196#1 GCCTCGATTATTTATTCTTCTCTTCCCGCGG--GGGAACGTCTCGAGAAAGG-AGGAATC 154
***** * * * * * * * ****** * *** *****
consensus_2196#0 GAGGGGAGCCCGGACCAGTACACGCTGGCCCAGGTTCTGCCCGATCGTGAGATGCTTCTG 416
consensus_2196#1 TCGTTAGGTTTGCGATGATGCATTTTTCTTTTTTTTTTTTTTTTTTCGTACGTCGTTTTA 214
* * * * ** * ** * * * * ** *
consensus_2196#0 CCAAATTCGGCCAACGTTTATTACGCCGT-CAACACCGCGCACAATCTCAACTTCATTCT 475
consensus_2196#1 TCCATGACAGTC--CGTTAATAACAATGTGTAATATCGCGATACTTTTTTTATTTATTCT 272
* * * * * **** ** ** ** ** * **** * * ** *****
consensus_2196#0 ACGNNNTAGAAGGGAGCCTAACGAGAGCGCCACCGAAAGTCCTAAGAGCAAGACGAGTCA 535
consensus_2196#1 TTCCTTTCCTTACGTGGTAATTGTAAACAACGCGTTAA---CAGCGATCGAATCGGATAA 329
* * * * * * * * * ** * ** * * ** * *
consensus_2196#0 CAAGCGGTAGTGTCGAAGAGNTTAGGATTATTATTACGTACGTTTGATAATCGATATTGA 595
consensus_2196#1 CAT-TGAT--CGTCGATCAAGCTGTCCTTCCCGTAAA----------------------- 363
** * * ***** * * ** * *
consensus_2196#0 TGGATT 601
consensus_2196#1 ------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |