These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 642 fasta sequence [GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGACGATCGCGATTAGCGAAAAGAAACGGGAACGGTCGATCACGGGATAACTTTCGAGTATCGAG] [+] EMBL BI504677 [GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGACGA ] [+] EMBL BI502803 [GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGA ] [+] EMBL BI509000 [ GTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGACGATCGCGATTAGCGAAAAGAAACGGGAACGGTCGATCACGGGATAACTTTCGAGTATCGAG] consensusID : consensus_239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [ACTAATAATTGTAATGGCAAATTGTCAAGATACGGATAAGACTGAAGATTTCATGAAATATTACAAATTTGATGGCCAATCTTATATATATAATGATCCTACGAATAATGTGACATATAAGTTTGATCAAGAAAAGAATGAATGGGTGGTAAAAAATACGGAAGAAATAAATGTTAAAAATTCAAATGATAATGAATCCAAGACGCAGGAAGGAGTATTTGGTTTTGAAAATGATACTCATACGTACACAGATCCTAATGATGGCAGTGTGTATTTTTGGGACAAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGA] [+] EMBL BI503265 [ACTAATAATTGTAATGGCAAATTGTCAAGATACGGATAAGACTGAAGATTTCATGAAATATTACAAATTTGATGGCCAATCTTATATATATAATGATCCTACGAATAATGTGACATATAAGTTTGATCAAGAAAAGAATGAATGGGTGGTAAAAAATACGGAAGAAATAAATGTTAAAAATTCAAATGATAATGAATCCAAGACGCAGGAAGGAGTATTTGGTTTTGAAAATGATACTCATACGTACACAGATCCTAATGATGGCAGTGTGTATTTTTGGGACAAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGA] consensusID : consensus_239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [AAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGATACAAATCGCATAGAAACAAAACCTGTGCAACAATTTCAATCACAAGGAAAGGTCGATAAAGAGAAAAAGAAGATGGAAGCCAAAAGAAAATCACAAGAACCACCGACCTGGTTCGAAGTGGATGAAGCCCATAATACTGCTATTTACGTGTCCGGTCTACCACTAGATATTACTATGGATGAACTTACCGAGCTTTTCAACAAGTGTGGTCTCATAGCGCGAGACGAAAAAGGAAAAGACAAAATCAAATTATACAAGGATTCGAATGGACAACCAAAGGGTGACGCTCTTTGTATCTATATAAAGGTCGAATCGGTGGATTTGGCATTAAAGATCTTGGATAAATCGCAAATCAGGGGTAAA] [+] EMBL BI503683 [AAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGATACAAATCGCATAGAAACAAAACCTGTGCAACAATTTCAATCACAAGGAAAGGTCGATAAAGAGAAAAAGAAGATGGAAGCCAAAAGAAAATCACAAGAACCACCGACCTGGTTCGAAGTGGATGAAGCCCATAATACTGCTATTTACGTGTCCGGTCTACCACTAGATATTACTATGGATGAACTTACCGAGCTTTTCAACAAGTGTGGTCTCATAGCGCGAGACGAAAAAGGAAAAGACAAAATCAAATTATACAAGGATTCGAATGGACAACCAAAGGGTGACGCTCTTTGTATCTATATAAAGGTCGAATCGGTGGATTTGGCATTAAAGATCTTGGATAAATCGCAAATCAGGGGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_239#0 GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACA 60 consensus_239#1 ---------------------------------------------ACTAATAATTGTAAT 15 consensus_239#2 -------------------------------------------------------AAAGA 5 * consensus_239#0 GGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTG 120 consensus_239#1 GGCAAATTGTCAAGATACGGATAAGACTGAAGATTTCATG-AAATATTACAAATTTGATG 74 consensus_239#2 GAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTA 65 * ** * *** ** ** * ** * * * consensus_239#0 GTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTT 180 consensus_239#1 GC-CAATCTTATATATATAATGATCC---TACGAA----TAATGTGACATATAAG-TTTG 125 consensus_239#2 ---TGGGTTTACAGATACAA--ATCG---CATAGAAACAAAACCTGTGCAACAAT-TTCA 116 * * * * * ** * * ** ** consensus_239#0 GGAA--ACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACC 238 consensus_239#1 ATCA--AGAAAAGAATGAATGGGTGGTAAAAAATACGGAAGAAATAAATGTTAAAAATTC 183 consensus_239#2 ATCACAAGGAAAGGTCGATAAAGAGAAAAAGAAGATGGAAGCCAAAAG-----AAAATCA 171 * * * * * * * * * * ** * ** consensus_239#0 GAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAA 298 consensus_239#1 AAATGATAATGAATCCAAGACGCAG----GAAGGAGTATTT------GGTTTTGAAA--- 230 consensus_239#2 CAAGAACCACCGACCTGGTTCGAAGTG--GATGAAGCCCATAATACTGCTATTTACG--- 226 ** * * * * ** * * * * * * consensus_239#0 GACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTG 358 consensus_239#1 -ATGATA--CTCATACGTACACAGA---------TCCTAATGATGGCAGTGTGTATTTTT 278 consensus_239#2 --TGTCCGGTCTACCACTAGATAT----------TACTATGGATGAACTTACCGAGCTTT 274 * ** * * * * * * ** consensus_239#0 GAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAAT 418 consensus_239#1 GGGACAAAGAGAAAAATGCAT------GGTTTCCAAAGGTGGATGAAGATTT-------- 324 consensus_239#2 TCAACAAGTGTGGTCTCATAG-----------CGCGAGACGAAAAAGGAA---------- 313 * * * * * * ** consensus_239#0 ACAAAACGAAGCGAAATATCAT-TGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATAT 477 consensus_239#1 ------CATGGCAAGATATCAAATGAGTTATGGG--TTTACAGGTAACATTTCGGGA--A 374 consensus_239#2 -------AAGACAAAAT--CAAATTATACAAGGA--TTCGAATGGACAACCAAAGGG--- 359 * * ** ** * * ** ** * * * * consensus_239#0 CGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAA 537 consensus_239#1 CCAGCAGAAGCA-CAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAA 433 consensus_239#2 -----TGACGCTCTTTGTATCTATATAAAGGTCGAAT--CGGTGGATTTGGC--ATTAAA 410 ** * * * * * ** consensus_239#0 AGCACATGCTTTA-TACGAAATA-CACAATTAAGAGTAACGTTGACGATCGCGATTAGCG 595 consensus_239#1 AATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGA 493 consensus_239#2 GATCTTGGATAAATCGCAAATCA--GGGGTAAA--------------------------- 441 * * * ** consensus_239#0 AAAAGAAACGGGAACGGTCGATCACGGGATAACTTTCGAGTA-TCGAG-- 642 consensus_239#1 AACGGAAGCTCGAATCGCTAA--ATGGGACAAATATCTAGAAACCGAAGA 541 consensus_239#2 -------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |