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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2400 cluster # 2400       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2400#0 length = 428 sequences # 1  
consensus_2400#1 length = 348 sequences # 1  

consensusID : consensus_2400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence
                              [ATGGAACGGCTTTCGAGAGTGGCATGTTATTTTCGATGGATGAGAAACGCGACATCTCATGATGCAAGTGAGGTTGAGGACGAACAGAAAACTATTAAAGTTGAACGATATCGAAATGTCGGATGTAATTTTGAAGCTTCGAGGCGACTTTGTGGTATTTTGGAAAGTATCCTTCTTTGGGAGAATTCTGTGAATAGTATTTCTGTCGTCATCGTATTTAATATACTGTTTTGGGTATTATTGTATTAGAGGTTTGAGGCTTTGCTGCAGCCAGCAGTGCTGCACTGGTCGTTGTTCTCTGTTATAGTACCTTAGAAACTCAAGTTCAAAAAGAAAATAAAGCATTGGATTTAGCTGCCTCTTATGCAAAAACAGAACAAATTGAGAAAATAGGAAAAAAAATAAAAACAGCAATTCATAATTTAAAG]

[+] EMBL BI504796             [ATGGAACGGCTTTCGAGAGTGGCATGTTATTTTCGATGGATGAGAAACGCGACATCTCATGATGCAAGTGAGGTTGAGGACGAACAGAAAACTATTAAAGTTGAACGATATCGAAATGTCGGATGTAATTTTGAAGCTTCGAGGCGACTTTGTGGTATTTTGGAAAGTATCCTTCTTTGGGAGAATTCTGTGAATAGTATTTCTGTCGTCATCGTATTTAATATACTGTTTTGGGTATTATTGTATTAGAGGTTTGAGGCTTTGCTGCAGCCAGCAGTGCTGCACTGGTCGTTGTTCTCTGTTATAGTACCTTAGAAACTCAAGTTCAAAAAGAAAATAAAGCATTGGATTTAGCTGCCTCTTATGCAAAAACAGAACAAATTGAGAAAATAGGAAAAAAAATAAAAACAGCAATTCATAATTTAAAG]


>consensus_2400#0 ATGGAACGGCTTTCGAGAGTGGCATGTTATTTTCGATGGATGAGAAACGCGACATCTCAT GATGCAAGTGAGGTTGAGGACGAACAGAAAACTATTAAAGTTGAACGATATCGAAATGTC GGATGTAATTTTGAAGCTTCGAGGCGACTTTGTGGTATTTTGGAAAGTATCCTTCTTTGG GAGAATTCTGTGAATAGTATTTCTGTCGTCATCGTATTTAATATACTGTTTTGGGTATTA TTGTATTAGAGGTTTGAGGCTTTGCTGCAGCCAGCAGTGCTGCACTGGTCGTTGTTCTCT GTTATAGTACCTTAGAAACTCAAGTTCAAAAAGAAAATAAAGCATTGGATTTAGCTGCCT CTTATGCAAAAACAGAACAAATTGAGAAAATAGGAAAAAAAATAAAAACAGCAATTCATA ATTTAAAG



consensusID : consensus_2400#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence
                              [TTCATTTGTTCTTTGTCAGTCGTTTAAGTCTTAATCCAGCCTTTCGTTTATATTCATTTCTATCTTTCTCACTTTTTGTTCTTTCTTCTCTGTCGTGTCAGCCTATCTCTTTCTTTCTCGATCTTTCTTTCCTTCTCACTCTATTCTCCGATGCAAAGCAGAAGAAACCCCCGCGGTTGCTCGTTCGTTCTCAAAAGTCTTACTCTCGTTGTCACGCGCTAAAAATACTCCCGCACAGTCTTCCGAGGGTGTACCATGCCAAAGGAGTACGGGAATTAGGACGACAAAAGCAGTCAACGTCGACCTGGAACTGTCATGGAACGGCTTTCGAGAGTGGCATGTTATTTT]

[+] EMBL BI503392             [TTCATTTGTTCTTTGTCAGTCGTTTAAGTCTTAATCCAGCCTTTCGTTTATATTCATTTCTATCTTTCTCACTTTTTGTTCTTTCTTCTCTGTCGTGTCAGCCTATCTCTTTCTTTCTCGATCTTTCTTTCCTTCTCACTCTATTCTCCGATGCAAAGCAGAAGAAACCCCCGCGGTTGCTCGTTCGTTCTCAAAAGTCTTACTCTCGTTGTCACGCGCTAAAAATACTCCCGCACAGTCTTCCGAGGGTGTACCATGCCAAAGGAGTACGGGAATTAGGACGACAAAAGCAGTCAACGTCGACCTGGAACTGTCATGGAACGGCTTTCGAGAGTGGCATGTTATTTT]


>consensus_2400#1 TTCATTTGTTCTTTGTCAGTCGTTTAAGTCTTAATCCAGCCTTTCGTTTATATTCATTTC TATCTTTCTCACTTTTTGTTCTTTCTTCTCTGTCGTGTCAGCCTATCTCTTTCTTTCTCG ATCTTTCTTTCCTTCTCACTCTATTCTCCGATGCAAAGCAGAAGAAACCCCCGCGGTTGC TCGTTCGTTCTCAAAAGTCTTACTCTCGTTGTCACGCGCTAAAAATACTCCCGCACAGTC TTCCGAGGGTGTACCATGCCAAAGGAGTACGGGAATTAGGACGACAAAAGCAGTCAACGT CGACCTGGAACTGTCATGGAACGGCTTTCGAGAGTGGCATGTTATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2400#0      ATGGAACGGCTTTCGAGAGTGGCATGTTATTTTCGATGGATGAGAAACGCGACATCTCAT 60
consensus_2400#1      ------------------------------------------------------------
                                                                                  

consensus_2400#0      GATGCAAGTGAGGTTGAGGACGAACAGAAAACTATTAAAGTTGAACGATATCGAAATGTC 120
consensus_2400#1      --TTCATTTGTTCTTT--GTCAGTCGTTTAAGTCTTAATCCAGCCTTTCGTTTATAT-TC 55
                        * **  **   **   * *   *    ** * ****    *       *  * ** **

consensus_2400#0      GGATGTAATTTTGAAGCTTCGAGGCGACTTTGTGGTATTTTGGAAAG-TATCCTTCTTTG 179
consensus_2400#1      ATTTCTATCTTTCTCACTTTTTGTTCTTTCTTCTCTGTCGTGTCAGCCTATCTCTTTCT- 114
                         * **  ***    ***   *     * *    * *  **  *   ****  * * * 

consensus_2400#0      GGAGAATTCTGTGAATAGTATTTCTGTCGTCATCGTATTTAATATACTGTTTTGGGTATT 239
consensus_2400#1      ------TTCT-----CGATCTTTCTTTCCTTCTCAC-TCTATTCTCCGATGCAAAGCAGA 162
                            ****        * ***** ** *  **   * ** * * *  *     * *  

consensus_2400#0      ATTGTATTAGAGGTTTGAGGCTTTGCTGCAGCCAGCAGTGCTGCACTGGTCGTTGTTCTC 299
consensus_2400#1      AGAAACCCCCGCGGTTGCTCGTTCGTTC---TCAAAAGTCTTACTCTCGTTGTCACGCGC 219
                      *           * ***    ** * *     **  ***  * * ** ** **    * *

consensus_2400#0      TGTTA-TAGTACCTTAGAAACTC----AAGTTCAAAAAGAAAATAAAGCATTGGATTTAG 354
consensus_2400#1      TAAAAATACTCCCGCACAGTCTTCCGAGGGTGTACCATGCCAAAGGAGTACGGGAATTAG 279
                      *   * ** * **  * *  **       **  *  * *  **   ** *  *** ****

consensus_2400#0      CTGCCTCTTATGCAAAAACAGAACAAATTGAGAAAATAGGAAAAAAAATAAAAACAGCAA 414
consensus_2400#1      G-ACGACAAAAGCAGTCA-ACGTCGACCTGGAACTGTCATGGAACGGCTTTCGAGAGTGG 337
                         *  *  * ***   * *   * *  **  *   *     **    *    * **   

consensus_2400#0      TTCATAATTTAAAG 428
consensus_2400#1      CATGTTATTTT--- 348
                          * ****    




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)