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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[AGTGCTCGACACCGCTGTTTAACAGGCCAGCTATAACTGTCGAGGATTTGCTGAAGGTGACCCTAAAAAAAGCACCGCAAAACTTTAAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCCTAGACATGTTACGCAGTGTGAAATTAAAATCTGCCAGGCGCAGAACGACTGATCAAATCATAAGGTCTCCAAGGAGCGGACGAATAATTAAAACGCGTACAGCGCCGAGTCTCAGTTTGTCTCCGATTACGAAAAACTCGGAGAACTCATTGGGTCGAATTCTGAAACAGGTGGAAATTAATAAACGTGGCCCAAGGCGTCTATTGTCGAGCTCGTCAAATTTTCGCGAAAATATTATTGGGAAAGATAATCAATTATCGGGCGTAGATACGAAAAATAACAATTCGCAATCTATGACTGCGTTACAGAAGTCGATAATCGTAGATTAAAGGAACATGTTATGTAATAATATTGATATCAGAAATCTTTATGTCGCAAACTTTAGTAAATTAACTTGTTATTTTGTTATTGATTAATCTTGATACATAGATCGGGTTATCTAATATAATATGATGAATAAGAATA]
[+] EMBL BI504509 [AGTGCTCGACACCGCTGTTTAACAGGCCAGCTATAACTGTCGAGGATTTGCTGAAGGTGACCCTAAAAAAAGCACCGCAAAACTTTAAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCCTAGACATGTTACGCAGTGTGAAATTAAAATCTGCCAGGCGCAGAACGACTGATCAAATCATAAGGTCTCCAAGGAGCGGACGAATAATTAAAACGCGTACAGCGCCGAGTCTCAGTTTGTCTCCGATTACGAAAAACTCGGAGAACTCATTGGGTCGAATTCTGAAACAGGTGGAAATTAATAAACGTGGCCCAAGGCGTCTATTGTCGAGCTCGTCAAATTTTCGCGAAAATATTATTGGGAAAGATAATCAATTATCGGGCGTAGATACGAAAAATAACAATTCGCAATCTATGACTGCGTTACAGAAGTCGATAATCGTAGATTAAAGGAACATGTTATGTAATAATATTGATATCAGAAATCTTTATGTCGCAAACTTTAGTAAATTAACTTGTTATTTTGTTATTGATTAATCTTGATACATAGATCGGGTTATCTAATATAATATGATGAATAAGAATA]
consensusID : consensus_2428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[AAATTTCTAAATTACTCCTACTTTAATCGTTTTCTATTTGCAAAAATTATTAAGTTAAACTAATTTTTAGAATCAAGCTGTTAGATTTTCTTATCGTCGATTCGTAAGAAGAATTACGTTGCTAAAGATAATACATTTTTCCAAGTATTTTAAATATTACTTTACTAGCCGGCCACTCGTCAAAGCGATTACAACTTTCACTCTGATCAATTGTTCCTCCAACCCTCGTTGCCATTCAACCGAACACTAGGGGGTTATTTAAAAATCCCAAGGTGATACATATATCTGTGTGAAAAATAAATCGGAAATCTGTCAAAGAGATTTCTTCTTCAGCACTTAAATTAATTTAAAATAAATATAATATGAATTGAAAGGATTAATTTGTCAATATCAAATATAATTTCTATCTTGGAATTATATATATATATATATATTAAAAATATACAAAGAAGAAAAATATTAATTTCAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCTTA]
[+] EMBL BI503329 [AAATTTCTAAATTACTCCTACTTTAATCGTTTTCTATTTGCAAAAATTATTAAGTTAAACTAATTTTTAGAATCAAGCTGTTAGATTTTCTTATCGTCGATTCGTAAGAAGAATTACGTTGCTAAAGATAATACATTTTTCCAAGTATTTTAAATATTACTTTACTAGCCGGCCACTCGTCAAAGCGATTACAACTTTCACTCTGATCAATTGTTCCTCCAACCCTCGTTGCCATTCAACCGAACACTAGGGGGTTATTTAAAAATCCCAAGGTGATACATATATCTGTGTGAAAAATAAATCGGAAATCTGTCAAAGAGATTTCTTCTTCAGCACTTAAATTAATTTAAAATAAATATAATATGAATTGAAAGGATTAATTTGTCAATATCAAATATAATTTCTATCTTGGAATTATATATATATATATATATTAAAAATATACAAAGAAGAAAAATATTAATTTCAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGACCCGTCGTTTCCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2428#0 --AGTGCTCGAC-ACCGCTGTTTAACAGGCCAGCTATAACTGTCGAGGATTTGCTGAAGG 57
consensus_2428#1 AAATTTCTAAATTACTCCTACTTTAATCGTTTTCTATTTGCAAAAATTATTAAGTTAAAC 60
* * ** * ** ** ** * * **** * *** * **
consensus_2428#0 TGACCCTAAAAAAAGCACCGCAAAACTTTAAGGAGAATAGAAGAAACACGATACCAGGAC 117
consensus_2428#1 TAATTTTTAGAATCAAGCTGTTAGATTTTCTTATCGTCGATTCGTAAGAAGAATTACGTT 120
* * * * ** * * * * *** * * * *
consensus_2428#0 CAAAGGGACCCGTCGTTTCCCTAGACATGTTACGCAGTGTGAAATTAAAATCTGCCAGGC 177
consensus_2428#1 GCTAAAGATAATACATTTTTCCAAGTATTTTAAATATTACTTTACTAG--CCGGCCACTC 178
* ** * *** * * ** *** * * * ** * **** *
consensus_2428#0 G-CAGAACGACTGATCAAATCATAAGGTCTCCAAGGAGCGGACGAATAATTAAAACGCGT 236
consensus_2428#1 GTCAAAGCGATTA--CAACTTTCACTCTGATCAATTGTTCCTCCAACCCTCGTTGC-CAT 235
* ** * *** * *** * * * *** * ** * * * *
consensus_2428#0 ACAGCGCCGAGTCTCAGTTTGTCTCCGATTACGAAAAACTCGGAGAACTCATTGGGTCGA 296
consensus_2428#1 TCAAC--CGAACACTAGGGGGTT----ATTTAAAAATCCCAAGGTGATACATATATCTGT 289
** * *** ** ** *** *** * * * *** *
consensus_2428#0 ATTCTGAAACAGGTGGAAATTAATAAACGTGGCCCAAGGCGTCTATTGTCGAGCTCGTCA 356
consensus_2428#1 GTGAAAAATAAATCGGAAATCTGTCAAAGAGATTT----CTTCT-TCAGCACTTAAATTA 344
* ** * ****** * ** * * * *** * * * *
consensus_2428#0 AATTTTCGCGAAAATATTATTGGGAAAGATAATCAATTATCGGGCGTAGATACGAAAAAT 416
consensus_2428#1 ATTTAAAATAAATATAATATGAATTGAAAGGATTAATT------TGTCAATATCAAATAT 398
* ** ** *** *** * * ** **** ** *** *** **
consensus_2428#0 AACAATTCGCAATCTATGACTGCGTTACAGAAGTCGATAATCGTAGATTAAAGGAACATG 476
consensus_2428#1 AATT--------TCTATCTTGGAATTATATATATATATA----TATATTAAAAATATACA 446
** ***** * *** * * * *** ** ****** * *
consensus_2428#0 TTATGTAATAATATTGATATCAGAAATCTTTATGTCGCA-AACTTTAG---TAAATTAAC 532
consensus_2428#1 AAGAAGAAAAATATTAATTTCAGGAGAATAGAAGAAACACGATACCAGGACCAAAGGGAC 506
** ****** ** **** * * * * ** * ** *** **
consensus_2428#0 TTGTTATTTTGTTATTGATTAATCTTGATACATAGATCGGGTTATCTAATATAATATGAT 592
consensus_2428#1 CCGTCGTTTCCTTA---------------------------------------------- 520
** *** ***
consensus_2428#0 GAATAAGAATA 603
consensus_2428#1 -----------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |